Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1969 ATGGCAATGACATCAAGACAAGGTGCAAAATCAAAAAGATTAGGATTGAATAATTCAAAAGCTGCTAATTCGCCATCATCTTCCACTACATCATCATCTAAACAGTTTCTTGAAACATCCATTGATGGTCTGAGTTCTCCTGCATCCTCATCTGCTCAAAGTAAGCCACCGTATTTCTACTCAGAAAGTGTGCCATTAGATGCTGAAAGAGCAAAAGAAAATGTCACAGTGACAGTAAGATTTCGTCCACTGAATCCAAGGGGAATTCGTCAAGGAGAGGAGATAGCATGGTATGCAGATGGAGAAACCATTGTGCGAAATGAGTATAATTCGTCCATAGCATATGTATACGATCGTGTCTTTGGTCCTACAACCACAACACGTCACTTCTACGATGTTGCTGCTCAGCATATTGTTAATGGTGCTATGGAGGGCATTAATGGTACAATATTTGCCTATGGGGAGGGTAACGATAGGCACGTCCCCTTGGAAGCATCTGCTGCTGCACAAGAGGCATTGGCTGGGACTGTGGCACAGGACCTGCTCCACGACGTCCCCCAGGGCGCTGACCTTGTGGTCCCTGCTGAACCATTGGGACAAAAAAAAAAATTTGGCATTGGAGCACCACGAGGCTGCGATCCGCACGCCATTGCCCAGAACATTACCTCGGCGCTGGTTCAGATGAGCTATGGTGGGCCTGTTTCCATCTCCGCCTACGGTGATACTACTCGCATCACGGCCTCTGTACAGCACGCTCACTCCAGTACCAGAATCTCCCTCAACCATGTCCCAGCTGGTGTTAGAGATGCTAGCGACAAAAAGATTCTTATTGACATGCTGTTTTGGGCTGTGGACAATCCTGCACCTGCTAACTATTTATTAATTTCTGGTGACCGAGACTTCTCTAACGCTCTTCATCGATTGAGGATGAGGAGATATAATATTCTTCTTGCACAGCCTCAGAAAGCATTTGCGCCCCTAGTTGCAGCTGCTAAGAGTAAGTTGATCACTACAATTAGTGAAGAAGAAAGCAGAGACGAAGTTCAACTTTCTGACATCCCTGGAGGTGCATCTGCCTTTGAGATTTGTGCCAAATTTTGCCATGGCATGGTTGTTACCCTCAATGCTTACAATGTGATTGCAGCTCGATTTGCAGCTGAGTACCTTGGAATGCACGAGACTGTTGAGAAAGGGAACCTCATCTACAAGATTGATGTTTTCCTTAACTCTAGCATTTTTCTCAGTTGGAAGGATTCAATCATTGTTCTTCAGACTTCTAAGTCTATTTCACCCTTGGCTCAAGACCTAAAGGTGGTCAATCATTGTGTTGAATCTATAGCAAATAAGGCATGTGTTGATGTATCTAAAGTTGACTGGTCCTATACCTATAACCGGAAAAAACTCCCAGAGGAAAATGGTATTGATCCAAACCAAAATGGAGTCAGAGCTCGTCTGGTGCCAAAAGACTGGTGGGTTGAGGACTTATGTGAGCTTGAAGTTGATTTATACAAGTCTGTAATTACTAACGTCAAAACCAAGGCAATTCTATCTACTGAAGTAATAGGAGAAGCTCTGAGAGCTTATGCTTACAGAAGATTGCCAAATTTCAGCAAGGGCATCATCCAATTGGAGGGTGTCAAAGTATTGTTTGGTAGAGACTTGAGTATAGAAGAGCTGGTTAGGAGAATTGGGCAGCAATTGGAGAAGGCTTCTGATCCCAATTTACCTTTGTCAGAGTTTGTTGATCTTGCTGAGTTGGTATCCGGTATCTCTTGTCCTGCTCATGATGGGCTTTACAGGGCCATTGACATGTATCTTAAGGCACACCCAGGGATGAGCAAAGGCGAGAGGAAGAGGATATGCAATCTGATGTCGCCCAAGGACACTGCAAAACCATCTACTAGTGGCAATGCGTCTCTAAACGCATCTCAGAACCTTTTAGCAAATGCAAGGATGTTGCCACCTGGAAACCCTCAGGCCTTACAGATGCCCCAAGGACTTCTTTCTGGTGTTTCAATGGCTCCAAGGCCACAGCAACTGGACCTACAACAGTCAGTGCAACAGCAACAATAG 2073 0.4491 MAMTSRQGAKSKRLGLNNSKAANSPSSSTTSSSKQFLETSIDGLSSPASSSAQSKPPYFYSESVPLDAERAKENVTVTVRFRPLNPRGIRQGEEIAWYADGETIVRNEYNSSIAYVYDRVFGPTTTTRHFYDVAAQHIVNGAMEGINGTIFAYGEGNDRHVPLEASAAAQEALAGTVAQDLLHDVPQGADLVVPAEPLGQKKKFGIGAPRGCDPHAIAQNITSALVQMSYGGPVSISAYGDTTRITASVQHAHSSTRISLNHVPAGVRDASDKKILIDMLFWAVDNPAPANYLLISGDRDFSNALHRLRMRRYNILLAQPQKAFAPLVAAAKSKLITTISEEESRDEVQLSDIPGGASAFEICAKFCHGMVVTLNAYNVIAARFAAEYLGMHETVEKGNLIYKIDVFLNSSIFLSWKDSIIVLQTSKSISPLAQDLKVVNHCVESIANKACVDVSKVDWSYTYNRKKLPEENGIDPNQNGVRARLVPKDWWVEDLCELEVDLYKSVITNVKTKAILSTEVIGEALRAYAYRRLPNFSKGIIQLEGVKVLFGRDLSIEELVRRIGQQLEKASDPNLPLSEFVDLAELVSGISCPAHDGLYRAIDMYLKAHPGMSKGERKRICNLMSPKDTAKPSTSGNASLNASQNLLANARMLPPGNPQALQMPQGLLSGVSMAPRPQQLDLQQSVQQQQ 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1969 690 Pfam NPH3 family 489 538 IPR027356 -
Dere02g1969 690 Pfam NPH3 family 570 626 IPR027356 -
Dere02g1969 690 Pfam NYN domain 210 332 IPR021139 GO:0004540
Dere02g1969 690 Pfam Kinesin motor domain 80 155 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Dere02g1969 690 Gene3D Kinesin motor domain 65 158 IPR036961 -
Dere02g1969 690 ProSiteProfiles Kinesin motor domain profile. 74 154 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Dere02g1969 690 MobiDBLite consensus disorder prediction 650 690 - -
Dere02g1969 690 MobiDBLite consensus disorder prediction 676 690 - -
Dere02g1969 690 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 155 IPR027417 -
Dere02g1969 690 CDD PIN_limkain_b1_N_like 209 320 - -
Dere02g1969 690 ProSiteProfiles NPH3 domain profile. 568 659 IPR027356 -
Dere02g1969 690 PANTHER OS12G0117600 PROTEIN 568 647 IPR043454 -
Dere02g1969 690 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1969 Dere-ChrDere02 19726918 19730903 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1969 209 339 C2H2 Transcription Factor Family AT5G61190 69.466 4.90e-53 196