Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1955 ATGAAACAGTTTTCCATGTGGCTAGTCTTCATGTCATTCCTTCTCCTCCTGAACACGAGCGATTGTGTGGAGGACGAGGTGAGCAGCACACTGATAAACTTTCTTGCAAAACTCTCCGGAAACAATGGCATCCAGAACTCTAATTTGGTCTGGAAGCCAGGTTCTGATCCCTGCAAGGACCTCTGGCAAGGTGTGGTATGTGATGCTGAAAATGTATCAGTACTGATGCTATTTCTTAACAGTTCCAATTTAGCTGGAACTTTCGATGCTGCTATACTCTGCAACTCGCAGCCCATTGCTGCGTCACTTACAACTCTTAGCCTCGACGGCAATAAAGTAAGTGGTGGAATAGCAGGCGAGGTTGGAAACTGCAAGCATCTCACACGATTGCATGTTAGTGGTAACCAACTTTCTGGGATTCTTCCTAGTTCACTTGCCATGTTGAGTAACTTAAAGAAACTTGACATTTCCAGCAATAGGTTCTCCGGGAATTTGCCAAACCTGTCCAGAATCACGGGGCTGAAAATGTTTTTGGCACAGAATAACCAGCTCAGTGGGGAGTTACCTTCTTTTGATTTCTCCAATTTTGACCACTTTAATGTCTCCTTCAACAATTTCAGTGGCCGCATTCCTGCTGTGCATGGTCATTTCTTTGCTGATAGTTTCTTGGGGAATCCTGAGCTTTGTGGAAATCCATTGCCAAAAAACTGTTCAGCTCTCCCTGTATCTGATGCCAAAACATCAGATTCAGAAGAATCGAAAGGTCCTTCAAAAAGCCAGATTCTTATGTATTCAGGCTATGCTGCACTGGGTTTGGTGTTTATCCTTCTTGTAGTTTTCAAGCTGTGTAAAAGAAACAAGACAAGTGAGAAGATTGAAGCGGTAAAAGAGGCAAGTGGGGATAGTGCTATTGACAACAAGCCTAGCCCTGTTTCAAGTGGATACAAATTAGGTGTGACCAGATCTGAGTTTTCAGTCACTTCTGGAAGTGAGATGGTTTCACAATCACTTGTAGTTCTTTCAAGGCCAAATGTAAATGATATTAAATTTGAGGACTTGATGAGGGCCCCTGCTGAACTTATTGGCCGAGGAAAGTTTGGTAGTCTTTATAAGGTGAAGCTAGACAACGGGATGATGGTGGTTGTTAAGAGGATTATGGACTTGACTGTATCAAGGCATGACTTCAAGCAAAGGATGCAAATGCTGAGCCAAGTGAAGCACCCTTCTGTACTCTCTCCTCTTGCTTTCTATTGTTCCAAACCAGATAAACTTTTAGTCTATGAATACCAGGAGAATGGAAGTTTATTCAAGCTTCTACATGATTCCTCGAAGGACTTTGACTGGACCAGTAGACTTGGGGTTGCAGCTACGGTAGCAGAGGCATTAGCTTTCATGCATCGAGAGCTTGGGGAACATGGTATTGCACATGGTAACTTGAAATCCTCCAACATTTTGCTAAACAAGAATATGGAGCCCTGCATAAGCGAGTATGGCGAAATGGATATGGAAGATCAACAAATTCAAACTCAACACAGTTCATCTTTTGCCAGTTCTTATTCTGCTAGAGCATCAGATGCTTTCAAGAGTGATGTTTATGGCTTTGGTGTGATTCTTCTGGAACTACTCACTGGAAAATTAGTGAAGAGCAATGGGATGGACTTGACTGAGTGGGTTCAGTCTGTTGTAAGGGAAGAATGGACAGGTGAAGTGTTTGACAGGTCCCTGATATCAGAGTATGCAAGTGAAGAGAGGATGGTGAGCTTGCTTCGAGTGGCTATAAAATGTATTAATCATTCTCCAGAGGCAAGGCCAAGCATGAACCAAGTTGCTCTCATGGTCAACACTATAAAAGAGGAAGAAGAGAAATCCTTGATTTATGAAGCATGA 1887 0.4282 MKQFSMWLVFMSFLLLLNTSDCVEDEVSSTLINFLAKLSGNNGIQNSNLVWKPGSDPCKDLWQGVVCDAENVSVLMLFLNSSNLAGTFDAAILCNSQPIAASLTTLSLDGNKVSGGIAGEVGNCKHLTRLHVSGNQLSGILPSSLAMLSNLKKLDISSNRFSGNLPNLSRITGLKMFLAQNNQLSGELPSFDFSNFDHFNVSFNNFSGRIPAVHGHFFADSFLGNPELCGNPLPKNCSALPVSDAKTSDSEESKGPSKSQILMYSGYAALGLVFILLVVFKLCKRNKTSEKIEAVKEASGDSAIDNKPSPVSSGYKLGVTRSEFSVTSGSEMVSQSLVVLSRPNVNDIKFEDLMRAPAELIGRGKFGSLYKVKLDNGMMVVVKRIMDLTVSRHDFKQRMQMLSQVKHPSVLSPLAFYCSKPDKLLVYEYQENGSLFKLLHDSSKDFDWTSRLGVAATVAEALAFMHRELGEHGIAHGNLKSSNILLNKNMEPCISEYGEMDMEDQQIQTQHSSSFASSYSARASDAFKSDVYGFGVILLELLTGKLVKSNGMDLTEWVQSVVREEWTGEVFDRSLISEYASEERMVSLLRVAIKCINHSPEARPSMNQVALMVNTIKEEEEKSLIYEA 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1955 628 Gene3D Ribonuclease Inhibitor 25 194 IPR032675 -
Dere02g1955 628 PANTHER OS05G0588300 PROTEIN 8 618 - -
Dere02g1955 628 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 95 188 - -
Dere02g1955 628 ProSiteProfiles Leucine-rich repeat profile. 150 172 IPR001611 GO:0005515
Dere02g1955 628 Gene3D Ribonuclease Inhibitor 195 240 IPR032675 -
Dere02g1955 628 ProSitePatterns Protein kinases ATP-binding region signature. 361 383 IPR017441 GO:0005524
Dere02g1955 628 Gene3D Phosphorylase Kinase; domain 1 322 429 - -
Dere02g1955 628 ProSiteProfiles Protein kinase domain profile. 355 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere02g1955 628 Gene3D Transferase(Phosphotransferase) domain 1 431 627 - -
Dere02g1955 628 SUPERFAMILY Protein kinase-like (PK-like) 359 612 IPR011009 -
Dere02g1955 628 Pfam Protein tyrosine and serine/threonine kinase 359 610 IPR001245 GO:0004672|GO:0006468
Dere02g1955 628 Pfam Leucine rich repeat 102 161 IPR001611 GO:0005515
Dere02g1955 628 SUPERFAMILY L domain-like 47 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1955 Dere-ChrDere02 19364395 19366378 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1955 6 617 Receptor kinase-like Gene Family AT3G08680 32.875 1.19e-90 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Dere02g1955 PK_Tyr_Ser-Thr 3.3e-26 CL0016