Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1954 ATGCCGCACAACATGTATCGTAAGTGGTTTTTTTACCATACCCATTTGAAGATGGCTTGGATTCAACATCAAATCCAGCAAAAAGATGGTTACTTGGGCTACCCACCACCGGATTTGCCTTCATATTCATCCCCATACCCAGGTTCTTTCCGCAACGAATCAATGTCTTCCTCGTCATCACCTTCATCTGCCGGTACTAAGATTAGTCCGGCTGTTCTTTTCATTATAGTGATTCTAGCCGTACTGTTTTTCATATCTGGTCTGCTTCATCTGCTTGTTAGATTTCTCGCGAAGCACCCATCGTCCTCACCATCTACTCATTCTAATAGACACCAGGAAATTTCCAGCTCCGATGCTCTGCAGAGACAGCTCCAACAACTTTTCCATCTCCATGATTCAGGTCTAGATCAAGCTTTCATTGATGCACTTCCTGTTTTCCAGTACAAAGAAATAGTGGGTCTGAAGGAACCATTTGACTGTGCTGTTTGTCTGTGTGAATTCTCTGAAATGGATAAGCTCAGGTTGCTTCCTACCTGCAGCCATGCTTTTCACATCAATTGCATAGACACCTGGCTCCTATCAAATTCGACATGTCCACTTTGTAGAGGAACCCTCTTTTCTCCAGGACTTTCGATTGAAAATCCAATGTTTGATTTTGATGATCTAAGGGAAGAAGACGGGTGCCCCTGTAATGGCGAAATTGGATTCACTGCTAGACAAAAAACTGTTGAAATTGAAGAAACCGTAGAGAAAGGGATTCTCCCTGTAAGACTCGGTAAATTTAGAAAGCTCAATATGGAGGCAGGGGAGAACGCAGGAGGAGAGACTAGCAGCAGTAATTTGGATGCAAGAAGATGTTTCTCAATGGGGTCTTACCAGTACGTGCTTGGCAACTCAGATCTACGAATTCCCTTGAACCATGACACAAAGCTCACAAAAGGAACAGAACACATTGATAAACTTTTAATGGAGACTGATAAGGAAGCCAAAAGGATTACAAGTGTGAGCAAGGGTGAGAGCTATTCTGTTTCGAAGATCTGGCTGTGGTCGAACAAGGGCAAATTTTCTAGTTCTTCAGACGATCAAATGGGCATGCCATCATCTCTCAACACAGATTTGCCTTGGATGAGGACAACAGAAGGGACCTAA 1149 0.4334 MPHNMYRKWFFYHTHLKMAWIQHQIQQKDGYLGYPPPDLPSYSSPYPGSFRNESMSSSSSPSSAGTKISPAVLFIIVILAVLFFISGLLHLLVRFLAKHPSSSPSTHSNRHQEISSSDALQRQLQQLFHLHDSGLDQAFIDALPVFQYKEIVGLKEPFDCAVCLCEFSEMDKLRLLPTCSHAFHINCIDTWLLSNSTCPLCRGTLFSPGLSIENPMFDFDDLREEDGCPCNGEIGFTARQKTVEIEETVEKGILPVRLGKFRKLNMEAGENAGGETSSSNLDARRCFSMGSYQYVLGNSDLRIPLNHDTKLTKGTEHIDKLLMETDKEAKRITSVSKGESYSVSKIWLWSNKGKFSSSSDDQMGMPSSLNTDLPWMRTTEGT 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1954 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 207 IPR013083 -
Dere02g1954 382 ProSiteProfiles Zinc finger RING-type profile. 160 202 IPR001841 -
Dere02g1954 382 CDD RING-H2_EL5-like 159 202 - -
Dere02g1954 382 MobiDBLite consensus disorder prediction 355 382 - -
Dere02g1954 382 Pfam Ring finger domain 159 202 IPR001841 -
Dere02g1954 382 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 63 347 - -
Dere02g1954 382 SMART ring_2 160 201 IPR001841 -
Dere02g1954 382 FunFam RING-H2 finger protein ATL46 122 207 - -
Dere02g1954 382 SUPERFAMILY RING/U-box 139 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1954 Dere-ChrDere02 19358544 19359692 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1954 57 359 C3H Transcription Factor Family AT2G18650 42.183 3.95e-61 201