Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1950 ATGTATAGAATAATATCCACGCCGGCCCATAAATTCCGCCAATTTGGGCGACTCCACGCCAAGCCCTCCGACGCCACCACCGACGAGGAACACGCCCACCACATCTTATGGCGTCATCAGATCCTCGACCCCGACAGCGACATAGTAGCACGTTGGAACAGGATCTTCCTCGTTACCAGTCTCATTGCGCTTTTCATAGATCCTCTTTACTTATACCTACCCTTCGTCGGAGGCCCGGGTTGCTTGCAAACGGACAAGAAATTGAGCATCATCGTCACTATCCTGCGCACCTTCTCAGACCTTTTCTACGTGCTCCACATGACCATGAAATTTCGCACCGCCTTCGTGGCCCCAAATTCTAGGGTTTTTGGTCGGGGTGAGCTGGTTACGGATGCCCGAGAAATTGCCAGGCGCTACTTGAAGTCTGATTTTGTTGTTGATCTCGCCGCAACGCTTCCACTGCCCCAGATTGTCATTTGGTTAGTAGTTCCATCGTCTTCAGCAGAACATGCCCACATCACTCTTGCTCTTCTCGTGCTTATTCAGTACGTTCCTAGATTGTTTCTTATCTTCCCTTTGAACAAGCGTATTGTGAAGACATCTGGTGTTGTTGCCAAGACTCCCTGGACTGGAGCTGCATACAATCTTCTACTCTACTTGCTAGCTAGTCATGTTATAGGAGCAACTTGGTATCTATCCGCAATAGCGCGACAATTAAATTGTTGGACTGACGAGTGCAAAGCTGAGAACGACTTACATGCCCTGTCTTGCCTTACTAGTTATCTTGATTGTCGGACTTTGGGCAACCCTGATAGGGAATACTGGCTAAATGTCACCCGTGTTGTTAAAAGCTGCGATGCAAAGAGCGGAAATAACAAATACTCGTTCGGGATGTTTGCAGATGCTTTCATGAAGGCAGTTGCTACTGGCAGTTTCAATGAGAGATACTTCTATTGTCTTTGGTGGGGTTTAAAAAATTTAAGCTCATATGGACAAAATTTGGACACCACAGTATTTATTGGGGAGACACTTTTTTCCATCATCCTATGCGTTGTTGGATTAGTTCTCTTTGCACTTTTGATTGGAAACATGCAGACATATTTAGAATCAATGTCAGCTAGACTTGAAGAATGGATTATTAGGAAAAGAGATACTGAGGAGTGGATGAGGCATCGCCAATTACCACCAGATTTGCAGGAACGTGTCCGTCGCTTTGTTCAATATAAATGGCTTGCAACAAGAGGAGTTGATGAAGAATCCATATTGCTTTCATTACCTTTGGATCTTCGTCGTGAAATTCAGCGCCACTTGTGTCTTTCTCTTGTTCGGCGTGTCCCCTTCTTTTCACAGATGGACGATCAACTACTTGATGCCATTTGTGAACGCCTTGTCTCGTCCCTGAGTACCGAAGGCACCTACATTTTTCGGGAGGGTGATCCGGTGAATGAAATGGTGTTCATCATTAGAGGGCAACTGGAGAGCTCCACAACCAATGGGGGAAGGTCCGGGTTCTTCAATTCCATTACCCTCAGACCTGGAGACTTTTGTGGCGAGGAATTATTGACATGGGCCTTAATGCCAAACTCTAGCTCAAACCTGCCTTCTTCTACTCGAACTGTTAAAGCCCATACTGAAGTTGAAGCTTTTGCACTACAGGCAGAGGATCTTAAAGTTGTAGCAGGTCAGTTCAAGCGCCTTCACAGTAAGAAACTTCAGCATGCCTTTAGGTATTATTCCCATCAATGGAGGGCATGGGCTGCTTGCCTCATAGAGGCTGCTTGGAGAAGGTACAAAAAACGCAAGGCATCTAGGGAGTTATCCTTGAAAGAAAGCCTTTACTACATGGCGAAACCAGAGGAAGAAACTAGTTACAGCGACATGCTTGCAATTAGAAATTACGAGGAGATTGAGGAGTCATCAGGTGCAAATGGCGGGCATTCTCTTGGTGTTACTGTTTTGGCCTCGAAGTTTGCTTCAAATGCAAGGAAAGGGACTACTAGCCAGAAACCTCAAGGCAGTGATCCTGTGCCCCAATTATTCAAGCCAGATGAACCCGATTTCTCTGTACCATAA 2073 0.4597 MYRIISTPAHKFRQFGRLHAKPSDATTDEEHAHHILWRHQILDPDSDIVARWNRIFLVTSLIALFIDPLYLYLPFVGGPGCLQTDKKLSIIVTILRTFSDLFYVLHMTMKFRTAFVAPNSRVFGRGELVTDAREIARRYLKSDFVVDLAATLPLPQIVIWLVVPSSSAEHAHITLALLVLIQYVPRLFLIFPLNKRIVKTSGVVAKTPWTGAAYNLLLYLLASHVIGATWYLSAIARQLNCWTDECKAENDLHALSCLTSYLDCRTLGNPDREYWLNVTRVVKSCDAKSGNNKYSFGMFADAFMKAVATGSFNERYFYCLWWGLKNLSSYGQNLDTTVFIGETLFSIILCVVGLVLFALLIGNMQTYLESMSARLEEWIIRKRDTEEWMRHRQLPPDLQERVRRFVQYKWLATRGVDEESILLSLPLDLRREIQRHLCLSLVRRVPFFSQMDDQLLDAICERLVSSLSTEGTYIFREGDPVNEMVFIIRGQLESSTTNGGRSGFFNSITLRPGDFCGEELLTWALMPNSSSNLPSSTRTVKAHTEVEAFALQAEDLKVVAGQFKRLHSKKLQHAFRYYSHQWRAWAACLIEAAWRRYKKRKASRELSLKESLYYMAKPEEETSYSDMLAIRNYEEIEESSGANGGHSLGVTVLASKFASNARKGTTSQKPQGSDPVPQLFKPDEPDFSVP 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1950 690 SMART cnmp_10 447 578 IPR000595 -
Dere02g1950 690 MobiDBLite consensus disorder prediction 661 690 - -
Dere02g1950 690 Pfam Cyclic nucleotide-binding domain 470 557 IPR000595 -
Dere02g1950 690 CDD CAP_ED 447 578 IPR000595 -
Dere02g1950 690 ProSiteProfiles cAMP/cGMP binding motif profile. 447 577 IPR000595 -
Dere02g1950 690 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 24 673 - -
Dere02g1950 690 Gene3D Helix hairpin bin 369 438 - -
Dere02g1950 690 Gene3D - 55 368 - -
Dere02g1950 690 Gene3D Jelly Rolls 445 565 IPR014710 -
Dere02g1950 690 Pfam Ion transport protein 52 374 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Dere02g1950 690 SUPERFAMILY cAMP-binding domain-like 381 572 IPR018490 -
Dere02g1950 690 SUPERFAMILY Voltage-gated potassium channels 43 369 - -
Dere02g1950 690 FunFam Cyclic nucleotide-gated ion channel 1 445 563 - -
Dere02g1950 690 FunFam Cyclic nucleotide-gated ion channel 1 374 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1950 Dere-ChrDere02 19286198 19289351 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1950 35 689 Ion Channels AT5G14870 67.665 0.0 971