Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1944 ATGGAAAACTTCATACCTGTGGTGCTACTATTTGTGGGGCTAGGGATCTTGATCGCATTTCATGTTTGTATGAGTTGGCGATCTGCTAGAACAGAAGCCAGAGGAACAGTAGTGGAGAGGGACACTACCAATGAGGGAACAAGCATGTCGAAAGATGAAATAGAGAAGCTTCCTTCCTTTTATTATATAGCCAAAGAAAATGGAGACAGTCCTGTGACTTGTGCAGTGTGCTTGGAGATTCTGATTACAGGGGATAAGTGCAGATTGTTGCCTATTTGCAAGCACAGCTTTCATGCCCATTGTGTGGACACGTGGCTTCTGAAGACACCCATTTGCCCAATTTGCAGGTCCAGTGCTGGCTCTCAGAGGGAAGCTCAGCGATAA 384 0.4583 MENFIPVVLLFVGLGILIAFHVCMSWRSARTEARGTVVERDTTNEGTSMSKDEIEKLPSFYYIAKENGDSPVTCAVCLEILITGDKCRLLPICKHSFHAHCVDTWLLKTPICPICRSSAGSQREAQR 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1944 127 ProSiteProfiles Zinc finger RING-type profile. 74 116 IPR001841 -
Dere02g1944 127 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 35 120 IPR013083 -
Dere02g1944 127 SUPERFAMILY RING/U-box 53 122 - -
Dere02g1944 127 Pfam Ring finger domain 73 116 IPR001841 -
Dere02g1944 127 SMART ring_2 74 115 IPR001841 -
Dere02g1944 127 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 7 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1944 Dere-ChrDere02 19211692 19212075 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1944 54 118 C3H Transcription Factor Family AT2G18650 50.000 4.81e-16 71.2