Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1943 ATGAGTAATAAATTTCTGGGTGTTGCAACAACAGTTGTGATAATGGGAATCATCCTATCTGTGGTACTACTATTTGTGGGGATTGGGTTCTTGATCTTGCTTCATGTCTGCATAATTGGGAGAGCCTCCAGAAGAGAAGGCAGAGGCACAATGGTGGAGAGGGACACTACCAATGTGGGAAGAAACATGTCGAAAGATGAGGTAGAGAAGCTTCCTTCCTATGATTATATAGCTAAAGAAAATGGAAGTAGCCCTGTGGATTGTGCCGTGTGCTTGGAAATTCTAAGTGCAGGGGATAAGTGCAGATTGTTGCCGATGTGCAAGCACAGCTTTCATGCTCAATGTGTGGACACGTGGCTTCTAAAAACACCCATTTGCCCAATTTGCAGGTCCAGTGCTGGCTCTCAGAGGGGAAGCTTAGCTATAAATTACAATGGCCATTTCAATGAACCAGACAGCGAACAGTTGAGGGATACCCCAGAAATTGGTCCATCTACAAACGTTAGAATGCAGTCAACAGAGAATTCAACATCAGAGGAATGA 543 0.442 MSNKFLGVATTVVIMGIILSVVLLFVGIGFLILLHVCIIGRASRREGRGTMVERDTTNVGRNMSKDEVEKLPSYDYIAKENGSSPVDCAVCLEILSAGDKCRLLPMCKHSFHAQCVDTWLLKTPICPICRSSAGSQRGSLAINYNGHFNEPDSEQLRDTPEIGPSTNVRMQSTENSTSEE 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1943 180 ProSiteProfiles Zinc finger RING-type profile. 88 130 IPR001841 -
Dere02g1943 180 SUPERFAMILY RING/U-box 87 138 - -
Dere02g1943 180 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 138 IPR013083 -
Dere02g1943 180 SMART ring_2 88 129 IPR001841 -
Dere02g1943 180 Pfam Ring finger domain 87 130 IPR001841 -
Dere02g1943 180 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 8 137 - -
Dere02g1943 180 MobiDBLite consensus disorder prediction 145 180 - -
Dere02g1943 180 MobiDBLite consensus disorder prediction 159 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1943 Dere-ChrDere02 19209763 19210305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1943 13 131 C3H Transcription Factor Family AT5G42200 31.667 3.87e-17 72.8