Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1941 ATGGAACTCACCGATTCCGGCGACGAACTCAGGGACCAGAAGCTGCCTCAAGACTCTCGCTCTGGACTCGGAATCGACCTCAATGAGATCCCCTCTCCTTCTTTTGCCGAAACCCTACCGGATTCCATCGACATCGTACGCGCTTACCACGAGAACCCGGCGCCTCCGCCCGGAGGCCCGGCGGGGATTCCCGGAGACGTCCGCGGCTCCACTTGTGGTGCCTGCGGGAAGCCCGAGGTGCGGGGTCATGTTGTGGTCTGCGACGGATGCGAGCGCGGCTACCATTTGGGCTGCGCGGGAATGCGTGGTCGCCAGGCTGTGAACCTTGATGAATGGGTTTGTGGAGAGTGCGTGTCCCGTGGGGTGAACAGTAAGCGCTGGCCATTGGGTGTCAAGTCCAAGCATCTTTTGGATATCAATGCTTCGCCACCCAGCGATGCTGATGGTGAGGGTAGTGAAGAATTGCAGGATTTGAGGAAGCACACGCGGGGTGATAATTCTTTTGGTGCCAACCCATTTGGTGCCCCAGTAACATATTCAAATTTCTTCAATGGGAATGCTTTTGGCTTCCAAAAAGTATCTGGAGTTGTGACGCATGCTGTTAGAGTGGGTTTTGAGGATGTGTTGAGTCGTACCCAATCAGTGACTACTAGTTTAGAAGAGGTAGATATGGATTTGCCTTCTGGAAGGCATAGGAATAGTAAAAATACTACTATTGGGCTACCTTCTCGAAGTCCAGGTGAGTTAATTTTGCAGGCTCTCAGAGATTTTATATCCGAAAGGCATGGTGTTCTGGAGGAAGGTTGGAGAGTGGAGTTTCGACAACCAATGAGCAGCTCTGAGCTGTATGCTGTTTACTGTGCACCAGACGGAAAGATCTTTGATTCTGTGTTTGAAGTAGCTTGTTATCTGGGGTTGATGCCTGGCTACAACTCTGTGGAGTCTGAAATAAGGAATGAAAGGTCCGTCTCCACATCAGGTGGGTCTCATTTAACCAGAAAAAGAAAGTCAGCTAGAATTCCAGTTGCCAATGGCTTTGCTGAAAGAAAGGATAGCTTTACCAACAGTTGTTTTAAAGATCTTTCCTCTGATGCTGTAAGTACAGAGTGTGCTAATGCATGTGGGAACATATCAGAAGCCACAATAGTTGGAAGAAAAGATGATGATCACTGTGGTCCTCAGCAGTCTGCTGATGGGCTTCCTTTACAGTTTGAAGATTTTTTTCTTATTTCTTTGGGAAAAGTTGATGCTAGACCTTCATATTCTGATGTTAACCTTATTTGGCCCATAGGTTATAAATCTTGTTGGCATGATAAGATTACAGGCTCCCTTTTTACATGTGAAGTTCTGGATGGTGGTGATTCTGGACCTATATTTAGGGTCAAAAGGTGTTCCTGTTCTGATTTTGCTATTCCAGTGGGCTCAACCATCCTCTCAAGGTCAAACCTTTCTCAAGTTGTGAGTCAAATCAATGAAGGTGAGAGAAAGATGAATGAAAGTATGGATTGGGATGGTGATGAAAGTATACAGACGATCCTCTTAGACCCTTGCATGCCAACAGAAAATGATGTCTTGAGTTGTCTTGAAAGTTGCTCTAATGAAGCACGTGATAGTCATACATCAGACATATTGCAGCCTGTAACTGGTTCAATTCAGGGTAAAACTCAAAATTTGTTGTCTAATGATGTGGGGTTGATTGGTGACATTTTGGTGGAAGAGCATTCGTCATCTGCAGCATGGAGAGATATTTCCCAAAAATTAGTTGATGCTTGCAATGAAATTTGTGAGCAGAAAGGGACTCTAAAGTTCTATTGTAAACATGTTGAGGATGAAACATGCTTACATAAATGGGATATAAGGAATGGCAAGAATGAAATACACTCGACTTCATTTGCTAAGTTTTGTGGGTCGCCTGCTCTTAGTATACCAGCTATAATTCATGCAGATAATGATCTGGAAAGTCTATATGAGGTCTTAAGTAAATGGTTGGAGCAGGATAGATTTGGATTAGATGTCGAGTTTGTACAAGAAGTACTCGAACTGCTTCCTGGCATTGAAAGCTCCTTGCAGTATGAATTTCTGAATAGGAGAAGTAATAGCTCTTCATTGCCAACAGTTGGGAATGGGTTCTTAGTGGCTGATTGGAGAGGTGGATCACAATATGAGGAAGAAGCCATGCAAGGTTTATATAGGAAGCACAAGAAAGTAAAATTGGCCAAAGAAAGTGTTGAGGAAGATCATTGTCCACCTCCTGGCAAGCCACTATGCTCTAGGGTTCCTTTTGAACTCGTTGGTGATGTTTTTCAGGCTTGGGAGCTATTACATAGATTTCATGAAATTTTGGGCCTGAAGGAACCTTTGTCATTGGATGAGCTGGAGAAGGAACTTATCAACCCATGGTTTGATGGATCAGTTTTTCATGAAAAACTTGAGAGGGATGGAAGTGGTGGAACAATCTTGCCCCCAAGCTGTGAAGCTGGTCCATCAGTTTCTGTTGAAAGTCCACATGCATTTATTCAAGTGGAAACAGAAGCTATGAAAGAAGCTGCTCAAGTTGAGCTCGCATCTTTCACTTACTCCAGATGCTTTGGCGTGTCTTTGACCAAGGCTCATAATTCTTTGTTGGAAGTTCTAATAGGGGAACTGCAATCCAAGGTGGCTGCCCTGGTGGATCCTAATTTTGATCCTGGAGAGCCAAGAACAAGACGTGGAAGAAGGAAAGATGTAGATAATACAGTTCCTGCCAGACGAGCCAAGCTCAATATGCTTCCTATTAATGAACTAACTTGGCCAGAATTGGCCCGTAGATACATATTAGCTGTCTTATCTATGGATGGTAACCCTGACTCACCAGAGATTACTGCACGGGAAAGTGGTAAAGTATTTCGCTGCTTACAAGGTGACGGTGGTTTGCTGTGTGGATCCCTTACTGGTGTGGCTGGGATGGAAGCAGATGCACTGTTGCTTGCAGAGGCTACAAAGAAAGTTTTTGGTTCTCTGAGCCGTGAAAATGTTGTACTTACCATGGAAGATGAGGAGTTTGATGCAAAGGATGCTTGTGAGAAAACTTCAGTGAATAATGGTAACATTCCAGAATGGGCACAGATGCTAGAACCTGTTAGAAAACTACCAACAAATGTGGGAACCAGAATCAGAAGGTGTGTGTATGATGCTTTGACTAAGGATCCACCAGAGTGGGCTAGGAAAATACTGGAACACTCAATTAGTAAGGAAGTGTACAAGGGCAATGCATCTGGACCAACAAAGAAAGCAGTTCTTTCTGTGTTGGCTGATGTAAGTGGTGAAGGATTGCAACAGAAGCCCAATAAAGGACAGAGAAAAAAGACTGTTATATCTATTTCTGACATTATCATGAAACAATGCCGCATTGTATTACGCCGTGCTGCTGCTGCAGATGATGCAAAAGTTTTTTGCAATTTGCTGGGACGAAAATTGATAAATTCTTCTGATAATGATGATGAGGGACTTCTTGGATCTCCAGCCATGGTGTCCCGTCCTCTTGACTTTAGGACTATTGATCTACGATTGGCTGCTGGGGCTTATGGTGGATCTCATGAAGCTTTTCTTGAGGATGTTCATGAGCTGTGGAACAATGTTCGTGTTGCTTTTGGGGATCAACCTGATTTAGTTGAGCTGGCAGAGAAATTATCTGAGAATTTTGAATTGTTGTATAATAACGAGGTTGTTACTTATGTCCAAAGGTTTGTGGAGTATGCTAAATTGGGAAGCTTAAGTACAGAGATGAGGAAGGAAGTGGAAAATTTTCTCGCATCAACAAGTGAAATTCCTAAAGCCCCCTGGGATGAGGGAGTCTGTAAAGTTTGTGGCATTGATAGGGATGATGACAGTGTTTTGCTATGTGATACCTGTGATGCCGAGTATCATACTTATTGCTTGAATCCTCCTCTTGCAAGGATTCCTGAAGGAAACTGGTACTGTCCTTCTTGTGTTGATTGTAAACATGCAGGTCAAAATGTTTCAGAATGTGCACATCTTATTGGCAAACATCGAAGAAAAAAATTTCAGGGAGAGGTCACTTCTCTTTACTTGGAGGCTCTGACACATCTATTATCTGTAATGGAAGAGAAAGAATACTGGGAGTACAGCGTGAGCGAGAGAACTGTCCTTCTCAAGTTTTTATGTGATGAGTTGCTCAACTCTTCCCTCATACGCCAGCACCTTGAGCAGTGTGCTGAGTTATCTGCTGAATTGCATCAGAAGTTGCGTGCACTTTCTGCAGAGTGGAAAAGCCTGAAAATCAAAGAAGATATATTGTCCACTAAAGCTGCAAAAATTGATACATGCTCACTAATAACTGCTGGAGAAGTTTGCCTCAAGGAGGGGCTTACAGGATCACTATCAAACCCTGGTAAATGCCTTGTTCAGCCACATACTGCAAGTGACAGTCCTAACAATCTTGGGGCACATGCTGATGGTATGCATTCGGAAGAGATAAGTAAAGAGAAAATTAGGCTCAACAGTGTTGATAAAAGTGTATCTTCAACAAATTCAGAGACAGACAGTCAAAATATGACTTCTGTAAATGTTGAGGGACAACTGAAGAATGTCTGTGCAGTTGTGGATGGCAGTCAATTGCCTACAACTCTGTTGTCATGTGTGGGTTCTCCATGCAGTGACAAATCTTATAAAACTTTTTCAATACCAAATAATATGCCTCAAGAAATTAACAGCTCTGCTGGAGCAGCCACTATCCAGGGCAACCAGCAGAAATTTGAGGGAAGGGATACATCTACTGATCAGCAAGGACAAAATGTGCCTCTTGATGTTCCTAAGTGTGCTGTGAATGAGGCAGAACCATACCACCTCGAGCTCAATGTCGTCAGACATGATATTTCACTTTTGCAGGACTCAATAACTAGTGTTGGATCACAGCTGCTGAAGCTTTCTGTTCGCCGGGAATTTTTGGGTATAGATTCACTTGGTCGATTGTACTGGGCTTCAGCTATGCCTGGAGGATGTCCATGTATACTAGTTGATTCAAGTGCTCCAATGTTGCATATGGGAAAAATGATTAATAGCAGAGACCCTGTGGACAAGATTTCTGCTATGCAGAATTGTGTACTATCTGGCAAGGATGCCTATCAGATGTTAGGGCTGATGAAGGACTCTTCTCCTTTATTGGCTCTACCGAGTAATACACTGGCCTTTAGTTCGCCTTGGGTTGCTTATCAGACTGATGCTGAAATTGAAGAGCTCTTAGGTTGGCTGAAGGATGGTGACCCTAAGGAAAGAGAACTTAAAGATTCCATTATGATTTGGCAAAAGTCAAGATTCCAAGAGTTTATTCATACACAGAATGAAGATCAGGTTGAGCACCAAAGACCTTTTTCCATGCCAGGAGATCGGGCGATTGATTCTCTTGTTACGAAGGCAACCTCCTTGTTGGAGAAGAAATATGGCCCATTCTTTGAGTCATATACCCTTGAGGTTTTGAAAAAGCGAGGTAAAAAGTCAAGAACAACTAATGATGACAAGTTGTACAGGTGTAAATGCCTAGAACCCATATGGCCTTCTAGGCAACATTGCATGTTTTGTCACAAAACCCTTTTGAATGATGTTGAACTGGAGGGACACAATGATGGCAAATGTAATGCTGGTTTGCCTGCCTCTGATAAGAATAAAGATATCAGTGGATCGTCTAAAGCAAGAGGGAATGTGAAATTTGAGACCACCGGTGAAAAAGTCAGAGGTGATACAGACATCGGTGGAACCTCCACTAGTGGATGTTCTGAGCTTAGCTCAAGATTGATTAAGTTTTCTAATCAGGAATCAACATGCCCGTATAACTTTGAAGACATCTGTTCTAGGTTTGTGACAAAAGATTCCAACAAGGAACTTGTTAAAGAAATAGGTCTTATTGATTCAGGTGGGATCCCAACCTTTGTTCCTTCTGTATCTCCTTATGTTAGTGATTCTACTGTTATGCTTATATCAGTTACAAAGGATGATGATATTGCTGGTGGATCCAAAGTTTCTGAAGGGCAGATTCCTCAAGGAAATGCTGAAGGAACTGGCGCATGCCATGGCCATATATCTGGACTTCCAATTGGAAGTTCAATTGCATATGACATCAATAAAGCAGGAAAATCCAATAGATCATCTTTGGGATGTCCAGAACAAAGAGATGGAAAGTCCTTATTTTGTAGTCTTGCTTCACAAATAGGGGTCGATGGCTGTTGTGTGGTACCTCGGTCTTCCTTGAGACCACTGGTTGGAAAAGTTTCACATATTTTGAGGCAACTGAAGAGCGGCCTACTTGATATGGATGCTGCACTCCCTGAAGTTGCTCTAAGACCATCAAAAGCACAGTTGGAAAGAAGACAGGCTTGGCGTGCATTTGTTAAATCTGCAATGACTATATATGAGATGGTCCAGGCAACAATTGCACTGGAAGACATGATTATGACAGAGTACTTGCGAAATGAATGGTGGTACTGGTCATCACTATCTGCCGCTGCCAAATCTTCTACCTTGTCATCCCTTGCCCTTCGAATATACTCCCTTGATTCAGCTATTATATATGAGAAATTATCCAGTCCAAGTTCTACTGATGGCTCTGAACCTGCTGTGGTAGCAGAACAGAAAGCATTGACCACTTTGGATGGAGAGAAATCCAGAGCAAGCCGGAAGTCGAGCAGGAAAAGGAAGGAACCAGATGGTTAA 6705 0.4313 MELTDSGDELRDQKLPQDSRSGLGIDLNEIPSPSFAETLPDSIDIVRAYHENPAPPPGGPAGIPGDVRGSTCGACGKPEVRGHVVVCDGCERGYHLGCAGMRGRQAVNLDEWVCGECVSRGVNSKRWPLGVKSKHLLDINASPPSDADGEGSEELQDLRKHTRGDNSFGANPFGAPVTYSNFFNGNAFGFQKVSGVVTHAVRVGFEDVLSRTQSVTTSLEEVDMDLPSGRHRNSKNTTIGLPSRSPGELILQALRDFISERHGVLEEGWRVEFRQPMSSSELYAVYCAPDGKIFDSVFEVACYLGLMPGYNSVESEIRNERSVSTSGGSHLTRKRKSARIPVANGFAERKDSFTNSCFKDLSSDAVSTECANACGNISEATIVGRKDDDHCGPQQSADGLPLQFEDFFLISLGKVDARPSYSDVNLIWPIGYKSCWHDKITGSLFTCEVLDGGDSGPIFRVKRCSCSDFAIPVGSTILSRSNLSQVVSQINEGERKMNESMDWDGDESIQTILLDPCMPTENDVLSCLESCSNEARDSHTSDILQPVTGSIQGKTQNLLSNDVGLIGDILVEEHSSSAAWRDISQKLVDACNEICEQKGTLKFYCKHVEDETCLHKWDIRNGKNEIHSTSFAKFCGSPALSIPAIIHADNDLESLYEVLSKWLEQDRFGLDVEFVQEVLELLPGIESSLQYEFLNRRSNSSSLPTVGNGFLVADWRGGSQYEEEAMQGLYRKHKKVKLAKESVEEDHCPPPGKPLCSRVPFELVGDVFQAWELLHRFHEILGLKEPLSLDELEKELINPWFDGSVFHEKLERDGSGGTILPPSCEAGPSVSVESPHAFIQVETEAMKEAAQVELASFTYSRCFGVSLTKAHNSLLEVLIGELQSKVAALVDPNFDPGEPRTRRGRRKDVDNTVPARRAKLNMLPINELTWPELARRYILAVLSMDGNPDSPEITARESGKVFRCLQGDGGLLCGSLTGVAGMEADALLLAEATKKVFGSLSRENVVLTMEDEEFDAKDACEKTSVNNGNIPEWAQMLEPVRKLPTNVGTRIRRCVYDALTKDPPEWARKILEHSISKEVYKGNASGPTKKAVLSVLADVSGEGLQQKPNKGQRKKTVISISDIIMKQCRIVLRRAAAADDAKVFCNLLGRKLINSSDNDDEGLLGSPAMVSRPLDFRTIDLRLAAGAYGGSHEAFLEDVHELWNNVRVAFGDQPDLVELAEKLSENFELLYNNEVVTYVQRFVEYAKLGSLSTEMRKEVENFLASTSEIPKAPWDEGVCKVCGIDRDDDSVLLCDTCDAEYHTYCLNPPLARIPEGNWYCPSCVDCKHAGQNVSECAHLIGKHRRKKFQGEVTSLYLEALTHLLSVMEEKEYWEYSVSERTVLLKFLCDELLNSSLIRQHLEQCAELSAELHQKLRALSAEWKSLKIKEDILSTKAAKIDTCSLITAGEVCLKEGLTGSLSNPGKCLVQPHTASDSPNNLGAHADGMHSEEISKEKIRLNSVDKSVSSTNSETDSQNMTSVNVEGQLKNVCAVVDGSQLPTTLLSCVGSPCSDKSYKTFSIPNNMPQEINSSAGAATIQGNQQKFEGRDTSTDQQGQNVPLDVPKCAVNEAEPYHLELNVVRHDISLLQDSITSVGSQLLKLSVRREFLGIDSLGRLYWASAMPGGCPCILVDSSAPMLHMGKMINSRDPVDKISAMQNCVLSGKDAYQMLGLMKDSSPLLALPSNTLAFSSPWVAYQTDAEIEELLGWLKDGDPKERELKDSIMIWQKSRFQEFIHTQNEDQVEHQRPFSMPGDRAIDSLVTKATSLLEKKYGPFFESYTLEVLKKRGKKSRTTNDDKLYRCKCLEPIWPSRQHCMFCHKTLLNDVELEGHNDGKCNAGLPASDKNKDISGSSKARGNVKFETTGEKVRGDTDIGGTSTSGCSELSSRLIKFSNQESTCPYNFEDICSRFVTKDSNKELVKEIGLIDSGGIPTFVPSVSPYVSDSTVMLISVTKDDDIAGGSKVSEGQIPQGNAEGTGACHGHISGLPIGSSIAYDINKAGKSNRSSLGCPEQRDGKSLFCSLASQIGVDGCCVVPRSSLRPLVGKVSHILRQLKSGLLDMDAALPEVALRPSKAQLERRQAWRAFVKSAMTIYEMVQATIALEDMIMTEYLRNEWWYWSSLSAAAKSSTLSSLALRIYSLDSAIIYEKLSSPSSTDGSEPAVVAEQKALTTLDGEKSRASRKSSRKRKEPDG 2234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1941 2234 CDD PHD1_Lid2p_like 1278 1323 - -
Dere02g1941 2234 Gene3D - 400 509 - -
Dere02g1941 2234 SUPERFAMILY Bromodomain 1113 1233 IPR036427 GO:0005515
Dere02g1941 2234 MobiDBLite consensus disorder prediction 2192 2234 - -
Dere02g1941 2234 Pfam Bromodomain 1167 1222 IPR001487 GO:0005515
Dere02g1941 2234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1238 1337 IPR013083 -
Dere02g1941 2234 ProSiteProfiles FYR domain FYRN motif profile. 399 452 IPR003888 GO:0005634
Dere02g1941 2234 SUPERFAMILY FYVE/PHD zinc finger 1264 1329 IPR011011 -
Dere02g1941 2234 ProSitePatterns Zinc finger PHD-type signature. 1279 1323 IPR019786 -
Dere02g1941 2234 ProSiteProfiles Bromodomain profile. 1169 1217 IPR001487 GO:0005515
Dere02g1941 2234 Coils Coil 1397 1421 - -
Dere02g1941 2234 CDD PHD_SF 71 117 - -
Dere02g1941 2234 ProSiteProfiles Zinc finger PHD-type profile. 69 120 IPR019787 -
Dere02g1941 2234 SMART PHD_3 1278 1324 IPR001965 -
Dere02g1941 2234 SMART PHD_3 71 118 IPR001965 -
Dere02g1941 2234 MobiDBLite consensus disorder prediction 2213 2234 - -
Dere02g1941 2234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 136 IPR013083 -
Dere02g1941 2234 Gene3D - 1120 1237 IPR036427 GO:0005515
Dere02g1941 2234 ProSitePatterns Zinc finger PHD-type signature. 72 117 IPR019786 -
Dere02g1941 2234 ProSiteProfiles Zinc finger PHD-type profile. 1276 1326 IPR019787 -
Dere02g1941 2234 PANTHER OS02G0192300 PROTEIN 14 2230 - -
Dere02g1941 2234 Pfam PHD-finger 1278 1325 IPR019787 -
Dere02g1941 2234 Pfam PHD-finger 72 119 IPR019787 -
Dere02g1941 2234 SUPERFAMILY DNA-binding domain 257 310 IPR016177 GO:0003677
Dere02g1941 2234 SUPERFAMILY FYVE/PHD zinc finger 70 129 IPR011011 -
Dere02g1941 2234 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 1358 1402 IPR028942 -
Dere02g1941 2234 MobiDBLite consensus disorder prediction 1 16 - -
Dere02g1941 2234 Pfam Methyl-CpG binding domain 256 307 IPR001739 GO:0003677
Dere02g1941 2234 MobiDBLite consensus disorder prediction 1 30 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1941 1 2234 C2H2 Transcription Factor Family AT3G01460 46.845 0.0 1828
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Dere02g1941 Bromodomain 3.5e-05 No_clan