Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1939 ATGGAGTCCGGCGGTCTTTTCTTCGACTCTTCCGCTTGCCGCGGGAATATGTTGTTCCTCCGGAAAGGTGATATCGGATTTGGAGGACGTTCGATGATAAGCATGGATGAGACCTCAAAGAAGCGATCTTTCTTCAGCTCACCGGAGGAACTGTTCGAAGAGGAATATTACGATGAGCAGCTGCCGGAGAAGAAGCGTCGCCTCACTCCTGAGCAGGTTCATCTGTTGGAGAAAAGCTTTGAGGTAGAGAACAAACTGGAGCCAGCAAGGAAGACACAGTTGGCCAATAAGCTGGGACTGCAGCCAAGGCAGGTGGCTGTATGGTTTCAGAACCGCAGGGCTCGGTGGAAGACCAAGCAGCTGGAAAGGGATTTTGATACTCTCAAGTCTTCCTACGATTCACTTCTTTTAAAGTATGAATTCGCTGTGAAGGAGAATGAAAAGCTTAAATCTGAGGTGGTATCCTTAAATGAGAAGCTTCAAGCAAAGGACATGCCCGGAGCACCAATTTTTTATCAAAAGATTGACCCACTTCCAGTGGCTATAGACCAACTTTCAGCCCTACCATTCAGCATGAGGGTGGAGGACCGCCTGAGTACTGGAAGTGGTGGAAGCGCAGTTGTGGACATGGATAGCCCACAGCTTGTTGTGGACAGTGTTGACTCATACTTTCCGGCTCACAGTTATGGCGGATACATTGCCGGAGTCAATAGGGTTCAGTCGGAGGATGATGACGGGAGTGATGATGGTCGGAGTTACTTCTCAGATGTGTTTGTGGCCCCCGAATCAGATCAGCAGAACCATGAGGCAGGAGATGCATTGGGTTGGTGGATTGGGCTTCCCAATCCTTTTGAAAAACCCGAATCCAATCTATTGGAATTGGATATTCCCGTGGAGCTCCAATGGAATGGCTGA 915 0.4907 MESGGLFFDSSACRGNMLFLRKGDIGFGGRSMISMDETSKKRSFFSSPEELFEEEYYDEQLPEKKRRLTPEQVHLLEKSFEVENKLEPARKTQLANKLGLQPRQVAVWFQNRRARWKTKQLERDFDTLKSSYDSLLLKYEFAVKENEKLKSEVVSLNEKLQAKDMPGAPIFYQKIDPLPVAIDQLSALPFSMRVEDRLSTGSGGSAVVDMDSPQLVVDSVDSYFPAHSYGGYIAGVNRVQSEDDDGSDDGRSYFSDVFVAPESDQQNHEAGDALGWWIGLPNPFEKPESNLLELDIPVELQWNG 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1939 304 ProSiteProfiles 'Homeobox' domain profile. 59 119 IPR001356 GO:0003677
Dere02g1939 304 PRINTS Lambda-repressor HTH signature 90 99 IPR000047 GO:0003677
Dere02g1939 304 PRINTS Lambda-repressor HTH signature 99 115 IPR000047 GO:0003677
Dere02g1939 304 CDD homeodomain 64 120 IPR001356 GO:0003677
Dere02g1939 304 Pfam Homeobox associated leucine zipper 119 161 IPR003106 GO:0006355|GO:0043565
Dere02g1939 304 Gene3D - 57 126 - -
Dere02g1939 304 Pfam Homeodomain 64 117 IPR001356 GO:0003677
Dere02g1939 304 SUPERFAMILY Homeodomain-like 58 121 IPR009057 -
Dere02g1939 304 Coils Coil 132 159 - -
Dere02g1939 304 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 50 217 IPR045224 GO:0003700
Dere02g1939 304 FunFam Homeobox-leucine zipper protein HAT5 57 121 - -
Dere02g1939 304 ProSitePatterns 'Homeobox' domain signature. 94 117 IPR017970 GO:0000981|GO:0006355
Dere02g1939 304 SMART HOX_1 62 123 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1939 Dere-ChrDere02 19180202 19183510 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1939 1 277 Homeobox Transcription Factor Family AT3G01470 55.401 5.53e-90 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Dere02g1939 Homeodomain 1.2e-17 CL0123