Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1924 ATGGCCTCTTCCAGCTACTCCAACTCTCCTTGTGCAGCCTGCAAGTTTCTGAGAAGGAAATGCATGCCAGATTGCATATTTGCCCCATACTTCCCACCAGAAGAACCTCAAAAATTTGCTAACGTTCACAAAATATTTGGTGCAAGCAACGTGAGTAAACTGCTGAACGAAGTGCTACCCCATCAGAGAGAGGATGCAGTGAACTCTCTGGCTTATGAAGCTGAAGCACGGATTAAAGATCCAGTCTATGGCTGTGTTGGGGCCATTTCAGTCCTCCAGAGGCAAGTCATTAGGCTCCAAAAGGAACTCGATGCCACAAACGCAGAAATGATTCGCTATTCCTGCAATGAAATGCCAACTACTCATCAAGATGGAGGAGCTTCGTCTCTTGGTCAATCTCCTTCTGCTTTTTATTATCCTTCTCCTTGGAGTAATGATCCTTGTGGGGAGGGCTATCACAGAGGAGGAGATAATAACATGTGA 483 0.4576 MASSSYSNSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVLPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVIRLQKELDATNAEMIRYSCNEMPTTHQDGGASSLGQSPSAFYYPSPWSNDPCGEGYHRGGDNNM 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1924 160 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Dere02g1924 160 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 123 - -
Dere02g1924 160 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
Dere02g1924 160 Coils Coil 89 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1924 Dere-ChrDere02 18934439 18934921 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1924 4 126 AS2 family AT3G27650 78.226 2.12e-69 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Dere02g1924 LOB 3.6e-42 No_clan