Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1922 ATGCCCAGCCTCAGACCGCCGATGAAGCCACTCCTGTCCCAATTTGTTGGGCACTTCTGTAAATATGGTGAGATTACGAAGTCTAAGCTAATGAGAGACGGGAGATCTGGAAAATATGGGTTTATAACCTATGTTGACCCTTCTGTAGCTGATAAAGTGATTGAGGACACTCATATTATCAATGGCAGCCAAGTGATTGTTAAGCGCACAAGGGAAGGAATGGATATTTTTGTTGGTCGCATTCCTGAAACAATGACGGAAGATGAATTAAGAGACTTATTCAAGTGGTATGGAGAGGTCGAAAAATACATGATAATACGAAGGCCTTTCACTAACCGTTCGCGTCGCTTCGGGTTTATATCCTTCGCCTCTGAGGAAATTGCTGAACAACTTCTTGCCACGAAGAACAATATTAAGTTTCGGAAAACCTTGGTGGTCCTTATGGTGGTGGCTATGGAAGTGGATATGACGGCGCTTACGATGGCTATGGACGTGGATATGGTATTGCTCATGGCCGTGGCTACGAAAGAGGATATCATGGTGCTTATGGTGGCTACGGAACCGGATATGGCGGTGCTCACGGTGGCTATAGATGTGGATACGGATGTGCCATGGGGGTATGTACAGGATACCCTTGCATTGGTTTACATGGAGGAAGCCTTCACAGAGTATATCATGTTGGTGGATATGGTGCAAACCTTAGTGGAAGATTTGTTGGTAGGTATGGACATGGTGCGAACCAAAGTGGTGCCTACTGCCTTCTACATTGCGAGCCCTAGTGGTGGATATTGCTGCTTTTATGGACACACAGAAAACGAGGGTGGTGGTGCCTCCGACGGCAGCAGTAGTGATTCTGATTCCTCTCATGGAAGTCCTGATTCTTCAGTCTGCATGTTAGTCTTTTTTCACTTCAATTTTAGAGCTACAAATTGTGCAGATGCTGTATCCACAGCCTTATTCATGATCACATGA 972 0.4547 MPSLRPPMKPLLSQFVGHFCKYGEITKSKLMRDGRSGKYGFITYVDPSVADKVIEDTHIINGSQVIVKRTREGMDIFVGRIPETMTEDELRDLFKWYGEVEKYMIIRRPFTNRSRRFGFISFASEEIAEQLLATKNNIKFRKTLVVLMVVAMEVDMTALTMAMDVDMVLLMAVATKEDIMVLMVATEPDMAVLTVAIDVDTDVPWGYVQDTLALVYMEEAFTEYIMLVDMVQTLVEDLLVGMDMVRTKVVPTAFYIASPSGGYCCFYGHTENEGGGASDGSSSDSDSSHGSPDSSVCMLVFFHFNFRATNCADAVSTALFMIT 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1922 323 SUPERFAMILY RNA-binding domain, RBD 75 142 IPR035979 GO:0003676
Dere02g1922 323 Gene3D - 13 71 IPR012677 -
Dere02g1922 323 SMART rrm1_1 13 68 IPR000504 GO:0003723
Dere02g1922 323 SMART rrm1_1 75 148 IPR000504 GO:0003723
Dere02g1922 323 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 76 143 IPR000504 GO:0003723
Dere02g1922 323 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 63 IPR000504 GO:0003723
Dere02g1922 323 Gene3D - 72 155 IPR012677 -
Dere02g1922 323 CDD RRM_SF 76 146 - -
Dere02g1922 323 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 14 139 - -
Dere02g1922 323 SUPERFAMILY RNA-binding domain, RBD 17 72 IPR035979 GO:0003676
Dere02g1922 323 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 74 151 IPR000504 GO:0003723
Dere02g1922 323 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 83 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1922 Dere-ChrDere02 18863561 18866165 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1922 19 140 Eukaryotic Initiation Factors Gene Family AT1G71770 28.571 6.10e-10 58.5