Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere02g1919 | ATGGAAGACCAGTCCTCCGCTCCGAGAGAAGAAATTGAAGAAAATTCCCAACCTCATAGAGCCGATGAAGCCACTCCTGTGTCGAACGACGCATGGTTAGTTCTTTGTCTTACCCAAATATGCTGTGGATTTTATTGTTGTATGTTAGTTTCTTACCCTTGGGATCACATTTCGTTGGCAGCCAAATTTCTCGAGTACTTCGATAAATATGGTGACGTTACGAAGATTGAACTAATGACGGATGGGGGATCTGGTAAATATGGGTTTATAACCTTCGCTAATCCTTTTGTAGCTGATAAAGTGATTGAGGACACTCATATTATCAATGGCAAACAAGTGATTGTTAAGCGCACAAGGGAAGGAATGGATATTCTTGTTCGTAGAATTCCTGAAACTATGACCGAAGATGAATTTAGAGACATCTTCAAGCAGTATGGAGAGGTCGAAAAATACATAATAATGCAAAACCCAATTACTAAGTGTTCGCGTGGCTTTGGTTTTATATCTTTCGCTTCTGAGGAAATTGCTGAACAACTTTTAGCTAAACCGAAGAAGATAAGGTTTCGGAATACCGTGCTAAAAATAAAGAGGGCCAAGTCAAAAACACCAAAAGCACAAACAGAGCGTCCACCTCCGTCTTCATACGGTAGTGGAAACAATGGTATTGGTGGCTATGGAAGAGGATATGGCGGTGTTTACGGTGGCCATGCAAGTGGAAATGGCTGTGCTCACGTTGGCCATGCAAGTGGATACGGCGGCCCTTACATTGGCTTTGCAAGTGGATACGGTGGTCCTTACGGTGGCTTTGGAGATGGGTACGGCAGTCCTTACGGTGGCACTGGAAGTGGATACGGCGGTCCTTACGGTGGCTTTGGAGGTGGATACGGCGGTCCTTACGGTGGCTTTGGAAGTGGATACGGCGGTCTTTATGGTGGCTATGGAAGTGGATACAGCGGTCCTTATGGTGGCTGTGGAATTACATGCGGCGGTGCTTATGGTGGCTATGGAAGTGGATATGGTGGTGGTACTGGTGCCCACGGAAGCAGTCATTATATTAATACGTACCCAAGTGGCCATGGATATGGTAGCTTTTATGTTGGTGGTGCCTCCTACATTCCGAACCCTAGTGGTGGATGA | 1137 | 0.4573 | MEDQSSAPREEIEENSQPHRADEATPVSNDAWLVLCLTQICCGFYCCMLVSYPWDHISLAAKFLEYFDKYGDVTKIELMTDGGSGKYGFITFANPFVADKVIEDTHIINGKQVIVKRTREGMDILVRRIPETMTEDEFRDIFKQYGEVEKYIIMQNPITKCSRGFGFISFASEEIAEQLLAKPKKIRFRNTVLKIKRAKSKTPKAQTERPPPSSYGSGNNGIGGYGRGYGGVYGGHASGNGCAHVGHASGYGGPYIGFASGYGGPYGGFGDGYGSPYGGTGSGYGGPYGGFGGGYGGPYGGFGSGYGGLYGGYGSGYSGPYGGCGITCGGAYGGYGSGYGGGTGAHGSSHYINTYPSGHGYGSFYVGGASYIPNPSGG | 378 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere02g1919 | 378 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Dere02g1919 | 378 | SUPERFAMILY | RNA-binding domain, RBD | 124 | 229 | IPR035979 | GO:0003676 | |
| Dere02g1919 | 378 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 122 | 200 | IPR000504 | GO:0003723 | |
| Dere02g1919 | 378 | MobiDBLite | consensus disorder prediction | 206 | 220 | - | - | |
| Dere02g1919 | 378 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 64 | 112 | IPR000504 | GO:0003723 | |
| Dere02g1919 | 378 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 124 | 193 | IPR000504 | GO:0003723 | |
| Dere02g1919 | 378 | MobiDBLite | consensus disorder prediction | 198 | 220 | - | - | |
| Dere02g1919 | 378 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 62 | 120 | IPR000504 | GO:0003723 | |
| Dere02g1919 | 378 | SMART | rrm1_1 | 123 | 196 | IPR000504 | GO:0003723 | |
| Dere02g1919 | 378 | SMART | rrm1_1 | 47 | 116 | IPR000504 | GO:0003723 | |
| Dere02g1919 | 378 | Gene3D | - | 118 | 237 | IPR012677 | - | |
| Dere02g1919 | 378 | Gene3D | - | 59 | 117 | IPR012677 | - | |
| Dere02g1919 | 378 | PANTHER | RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN | 61 | 349 | - | - | |
| Dere02g1919 | 378 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
| Dere02g1919 | 378 | SUPERFAMILY | RNA-binding domain, RBD | 64 | 120 | IPR035979 | GO:0003676 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dere02g1919 | Dere-ChrDere02 | 18849411 | 18852568 | Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dere02g1919 | 65 | 209 | Eukaryotic Initiation Factors Gene Family | AT1G71770 | 27.607 | 6.12e-11 | 62.0 |