Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1917 ATGGCAGAGAACTATTTATATCTGGCATACCGGAAAACACGACACAGGGTTAGTTCTTTGTCATACATACCCAGCGCCAATCCCACTTCTGCTGTAGATTTCATTGTTGTATATGTTAATCAATATTATCCTTGGATTGCAGCTGAATTTATGTCGTACTTTAGTCGTTATGGCGATATCACGAAGTCTTATATAGTGTCGAAGAACGTTGGGATTTCTCGAGGATATGGGTATCTAACCTATGCTGATCCTTCTGTTGCCGATAAAGTCATTAAGGAGGACAATCATATGATCAAGTCCGAACAAGTTACGGTTCGACGGGCAATACCATGGAGAACAAAAAAGATTTTTGTTGGTGGACTTCATGAAGCCATGACAGAAGTTGAATTTAGAGACCTCTTCAGGAAGCATGGAAACGTCATAGAATCCGAAATAATACGAGACCATGTTACCGGCTGTTCTCGTCGCTATGGGTTTATAACCTTCGATTCTGAGCAAACTGTTGAACGACTTATTGCTAATCATGGGTACACGCTTCGGTATAAGAAAAGTAAGTTGGGGATCAGGAAGTATGAGCCTTGGAGATCAAAACAGAATCGTCCCCCTCCATCTTCACATGCTAGTGCTGCAACTGTTGGAAGCAATCAGTCAGGCGGTGCTAGTGGTGACGATGGAAGGGGATACGGTGGTGCTTACGGTGGCTATGAAGGGAGATACAGTGGTGTCGTTGCCGTGGCGGCCTATGCAGCATACCCGGGTGTCTGCGTTGGGCACGATGGTCCATATAGCAGAGGATATCTTCTTGTTCCGTGTGGTGTTACACTGATGCCTACGGAATCTGCTATAACTTATAGCAGTGGTGGCGGCTATGGTTCCTTCTATGGGAGTGCATATGGTGGACACGGTGACAGCAGTGCGGCGGTGCCTCCGACGGAATCAGATAGGGAAGATATAGACGAAGACTTTAGTAGCTAG 975 0.4564 MAENYLYLAYRKTRHRVSSLSYIPSANPTSAVDFIVVYVNQYYPWIAAEFMSYFSRYGDITKSYIVSKNVGISRGYGYLTYADPSVADKVIKEDNHMIKSEQVTVRRAIPWRTKKIFVGGLHEAMTEVEFRDLFRKHGNVIESEIIRDHVTGCSRRYGFITFDSEQTVERLIANHGYTLRYKKSKLGIRKYEPWRSKQNRPPPSSHASAATVGSNQSGGASGDDGRGYGGAYGGYEGRYSGVVAVAAYAAYPGVCVGHDGPYSRGYLLVPCGVTLMPTESAITYSSGGGYGSFYGSAYGGHGDSSAAVPPTESDREDIDEDFSS 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1917 324 MobiDBLite consensus disorder prediction 302 324 - -
Dere02g1917 324 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 35 110 IPR000504 GO:0003723
Dere02g1917 324 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 114 193 IPR000504 GO:0003723
Dere02g1917 324 SUPERFAMILY RNA-binding domain, RBD 48 110 IPR035979 GO:0003676
Dere02g1917 324 SMART rrm1_1 115 187 IPR000504 GO:0003723
Dere02g1917 324 SMART rrm1_1 36 106 IPR000504 GO:0003723
Dere02g1917 324 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 116 179 IPR000504 GO:0003723
Dere02g1917 324 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 53 101 IPR000504 GO:0003723
Dere02g1917 324 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 48 302 - -
Dere02g1917 324 MobiDBLite consensus disorder prediction 192 225 - -
Dere02g1917 324 SUPERFAMILY RNA-binding domain, RBD 113 223 IPR035979 GO:0003676
Dere02g1917 324 Gene3D - 40 109 IPR012677 -
Dere02g1917 324 Gene3D - 111 241 IPR012677 -
Dere02g1917 324 MobiDBLite consensus disorder prediction 198 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1917 Dere-ChrDere02 18822886 18825224 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1917 73 233 Eukaryotic Initiation Factors Gene Family AT4G34110 25.434 6.67e-08 52.0