Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1888 ATGGCTCATCTTCCAGCTTGCTTTCTTCTTTTTTCTCTCTCACTCTTTGTTTCCTCCTTGGCAGTTCAAGACCCTGAACAAGTTGTACAAGACGTACACAGGAGCATCAATGCCTCGAGAAGAAGCTTGGGCTATTTATCGTGTGGAACCGGCAACCCCATCGACGACTGCTGGCGGTGCGACCCAAACTGGGAGCGGAACCGGCAGAGGCTAGCCGATTGCGCCATCGGGTTCGGGAAGGACGCCATTGGAGGAAGAAACGGTCGAATCTACGTGGTCACGGACTCCGGCGACGACGACCCAGTGAACCCGAGGCCTGGAACTCTAAGACACGCCGTGATACAAGACGAGCCGTTGTGGATTATCTTCAAGAGAGACATGGTCATTACTCTGAAGCAGGAGCTCGTGATGAACTCCTTCAAGACGATTGACGGAAGAGGTGCGAGTGTTCACATTGCCGGAGGGGGATGCCTAACTATACACTACGTGAGTAACATTATCATTCACGGCATTCACATTCACGACTGTAAGCCCACCGGGCATGGCGATATCAGAGACTCTCCCCGCCATTATGGGTGGTGGACGGTGTCGGACGGCGACGGCATCTCTATATTTAATTCGAGGCACGTGTGGGTTGACCACTGCTCGCTCTCGAATTGCCATGACGGTCTCATTGATGCTATTCATGGATCCACGGCTATCACTATCTCCAACAACTACATGACCCATCATGATAAGGTTATGCTCTTGGGCCACAGCGACTCTTACACTCAAGACAAGAACATGCAGGTTACTATCGCCTTCAACCACTTTGGAGAAGGCCTTGTCCAGAGAATGCCAAGGTGCAGACATGGGTATTTTCACGTGGTGAACAATGACTATACACACTGGGAAATGTACGCAATTGGTGGGAGTGCTGACCCTACCATAAACAGCCAAGGAAACAGGTTTCTTGCACCAGATAACAGGTTTAGCAAGGAGGTGACGAAGCACGAGGATGCTCCAGAGGATGAATGGATGAACTGGAACTGGAGGTCTGAAGGTGACCTCTTCATTAACGGAGCATACTTCAGGCAATCTGGTGCAGGTGCTTCCTCCAGCTACGCTAGAGCCTCAAGTCTCAGTGCAAGACCCTCTTCTCTTGTTGGCTCCATGACCATCACTGCTGGTGTACTCACCTGCAGGAAGGGCAATCGTTGCTGA 1203 0.5137 MAHLPACFLLFSLSLFVSSLAVQDPEQVVQDVHRSINASRRSLGYLSCGTGNPIDDCWRCDPNWERNRQRLADCAIGFGKDAIGGRNGRIYVVTDSGDDDPVNPRPGTLRHAVIQDEPLWIIFKRDMVITLKQELVMNSFKTIDGRGASVHIAGGGCLTIHYVSNIIIHGIHIHDCKPTGHGDIRDSPRHYGWWTVSDGDGISIFNSRHVWVDHCSLSNCHDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQGNRFLAPDNRFSKEVTKHEDAPEDEWMNWNWRSEGDLFINGAYFRQSGAGASSSYARASSLSARPSSLVGSMTITAGVLTCRKGNRC 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1888 400 Gene3D - 51 393 IPR012334 -
Dere02g1888 400 Pfam Pectate lyase 132 317 IPR002022 -
Dere02g1888 400 PANTHER PECTATE LYASE 18-RELATED 22 398 IPR045032 GO:0030570
Dere02g1888 400 SUPERFAMILY Pectin lyase-like 36 392 IPR011050 -
Dere02g1888 400 SMART amb_all 126 323 IPR002022 -
Dere02g1888 400 FunFam Pectate lyase 51 393 - -
Dere02g1888 400 PRINTS Pollen allergen Amb family signature 134 150 IPR018082 -
Dere02g1888 400 PRINTS Pollen allergen Amb family signature 371 394 IPR018082 -
Dere02g1888 400 PRINTS Pollen allergen Amb family signature 74 91 IPR018082 -
Dere02g1888 400 PRINTS Pollen allergen Amb family signature 342 366 IPR018082 -
Dere02g1888 400 PRINTS Pollen allergen Amb family signature 278 297 IPR018082 -
Dere02g1888 400 PRINTS Pollen allergen Amb family signature 98 123 IPR018082 -
Dere02g1888 400 PRINTS Pollen allergen Amb family signature 300 319 IPR018082 -
Dere02g1888 400 PRINTS Pollen allergen Amb family signature 198 219 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1888 Dere-ChrDere02 18586989 18588807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1888 7 400 Polysaccharide Lyase AT5G63180 77.889 0.0 634