Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1882 ATGGCTTTTTCTTCTTCGTCTTCTACCTCCCTACCTGTGTTCCTCTTTATCACTACTCTCTGGTGCAGTGTGTCTTGCTTTGAGTTCCAAGTGGGGGGCTCAGAAGGCTGGGTTGTCCCACCTGCCAATCGCACCAAGCTCTACAATGAATGGGCTTCACAGAATAGGTTCCTGGTTGGTGACTCTATCCGGTTCATGTACAAGAAGGACTCGGTGATGGAGGTGGAGGAGGAAGGATACAACACCTGCAACTCCAGTCACCCCAACATGTTCTCCAACAATGGCAACACTGTGTTTAGGTTCGACCATGCGGGCTCCTTCTACTTCATCAGTGGTGCATCTGGGCACTGCCAGAAGGGACAGAAGATGATCGTGAGGGTGCTCACGCAGGAGGATTCTCTTCCTCATCATGCCGAATCTTCTGCGCTCCGTCTTCATATATCACCAGTTCTGTACTCTAACATCGTCGTCTTTGTTTTCGCATTTGTTGCTTCATATGTTTCAATTCCCCCTCCTTTTCCCTTTGCGTTTCACTATCGCGGTGTTTCTTATTCCTCTCATCTGTGGCACGCAAAAATGGCGACGGGTTTGTTCAGAAGGTCGGTTTCTAGGGTTTTGTCATCGCCGGCATCCAAGCTGCTGAGGGCTCGAGCCCATGCCTCCGAAGCTCAGGGCCAGCAGGTGGAGCCCACCGCTCGCGACTCCACCGCCTTCAAGACCTTCCGCATCTACCGATGGAGCCCGGACAATCCTGCCAAGCCTCAGCTTCAGGAGTACCAGATCAATCTCAAGGAGTGTGGGCCCATGGTCCTTGATGCCTTGATCAAAATCAAGAACGAGATCGATCCCTCGATCACTTTCCGCAGGTCGTGCCGGGAGGGAATCTGCGGGTCCTGCGCCATGAACATTGATGGGTGTAATGGGTTAGCTTGCTTGACCAAGATCCCTTCTGGGTCTGAAACCATGATTACTCCTTTGCCTCATATGTTTGTAATCAAGGATCTCGTCGTGGATATGACCAATTTCTACAATCAGTACAAGAGTATCGAGCCGTGGTTGAAGAGGAAGAACCCACCCCCGGTTCCTGGTAAGGAGATACCTCAGAGCAAGAAGGACAGGTTGAAGCTCGATGGGATGTACGAGTGCATATTGTGCGCATGCTGTAGCACATCCTGCCCTAGTTACTGGTGGAATCCCGAGTCTTACCTGGGTCCCGCTGCTCTGCTCCACGCTAATAGGTGGATAAGCGACAGTCGTGATGAGTACACCAATGAGCGATTGGAGGCCATTAACGATGAATTCAAGCTCTATCGCTGCCACACCATATTGAACTGTGCTCGTGCCTGTCCAAAGGGCTTGAACCCTGGAAAGCAAATCCAAAATATCAAGAGGCTTGAGCTGGGAGTTGCCCGCACCTAA 1419 0.5137 MAFSSSSSTSLPVFLFITTLWCSVSCFEFQVGGSEGWVVPPANRTKLYNEWASQNRFLVGDSIRFMYKKDSVMEVEEEGYNTCNSSHPNMFSNNGNTVFRFDHAGSFYFISGASGHCQKGQKMIVRVLTQEDSLPHHAESSALRLHISPVLYSNIVVFVFAFVASYVSIPPPFPFAFHYRGVSYSSHLWHAKMATGLFRRSVSRVLSSPASKLLRARAHASEAQGQQVEPTARDSTAFKTFRIYRWSPDNPAKPQLQEYQINLKECGPMVLDALIKIKNEIDPSITFRRSCREGICGSCAMNIDGCNGLACLTKIPSGSETMITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPPPVPGKEIPQSKKDRLKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEYTNERLEAINDEFKLYRCHTILNCARACPKGLNPGKQIQNIKRLELGVART 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1882 472 SUPERFAMILY alpha-helical ferredoxin 339 465 - -
Dere02g1882 472 FunFam Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial 229 338 - -
Dere02g1882 472 ProSiteProfiles Phytocyanin domain profile. 27 129 IPR003245 GO:0009055
Dere02g1882 472 PANTHER SUCCINATE DEHYDROGENASE IRON-SULFUR PROTEIN 231 467 - -
Dere02g1882 472 CDD OsENODL1_like 27 128 IPR041846 -
Dere02g1882 472 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 372 402 IPR017896 -
Dere02g1882 472 FunFam Early nodulin-like protein 1 26 132 - -
Dere02g1882 472 FunFam Succinate dehydrogenase iron-sulfur subunit SdhB 339 470 - -
Dere02g1882 472 Pfam Plastocyanin-like domain 46 121 IPR003245 GO:0009055
Dere02g1882 472 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 382 393 IPR017900 -
Dere02g1882 472 NCBIfam succinate dehydrogenase and fumarate reductase iron-sulfur protein 243 463 IPR004489 GO:0006099|GO:0016491
Dere02g1882 472 CDD fer2 270 304 IPR001041 GO:0051536
Dere02g1882 472 ProSiteProfiles 2Fe-2S ferredoxin-type iron-sulfur binding domain profile. 241 329 IPR001041 GO:0051536
Dere02g1882 472 Pfam 4Fe-4S dicluster domain 381 454 - -
Dere02g1882 472 Gene3D - 229 338 IPR012675 -
Dere02g1882 472 SUPERFAMILY Cupredoxins 27 128 IPR008972 -
Dere02g1882 472 Gene3D - 339 471 IPR009051 GO:0051536
Dere02g1882 472 Pfam 2Fe-2S iron-sulfur cluster binding domain 240 343 IPR025192 GO:0009055|GO:0051536
Dere02g1882 472 Gene3D - 26 133 IPR008972 -
Dere02g1882 472 ProSitePatterns 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 291 299 IPR006058 GO:0051537
Dere02g1882 472 SUPERFAMILY 2Fe-2S ferredoxin-like 238 338 IPR036010 GO:0051536
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1882 Dere-ChrDere02 18553170 18556868 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1882 15 145 Phytocyanin Superfamily AT5G14345 50.382 1.59e-40 140