Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1875 ATGGGCAGAAAGCCATGTTGTGAGAAGGTTGGTTTGAACAAAGGTCCATGGACAATTGATGAAGATCATAAGCTGGTGAACTTTATCATCAACAATGGCCTCCACAGCTGGCCATTGGTTCCCAAGCTTGCAGGACCTAATGAAAATCACATGGTCAGGTGGTCCAAGATTGCTGCACATTTTCCTGGGAGGACAGACAATGAAATCAAGAACCATTGGAACACAAGAATTAAGAAAAAGATGATGCTCCTTGGTCTGGAACCAGTGACCCACCAGAAAATTGACCAAAAGGAACACGCTGATGATAAAAATAAGACAAACCTCAGACCAAGTTCTTCAAAGAGGCCCAAGAGAAAAGAAAATGTGGAGATCATGTCCTTGGATAGTCATGCCATGGAAGTAATGTCGAAAATAGAAGGGAACAGAGAAGAAGAAAAGGTGGCTCTGAATGATGATATCCCCCCTGAATTTGCCATGGAAGAAATGCCGAAAGCAGAAGGGAAGAAAAGAGAAGACAAGGTGCCCTGGGATGATTATACCGACACTGATCTTCTAAACTACTATGAAATGATATGCTGGCACTTGGAGTTGAAATCATGGATCAGTCAAGGAATCAACTTCGGTACTAGTTTCCACAGTTCTCTTTCTCTGGATGATTCTAGCCACATTTCTATAGGTGAATCTTCTTACGTTGAGGATAACACCTTACAGCTATGGGTTGATAGTATGAATCCCATTCCGTAA 744 0.422 MGRKPCCEKVGLNKGPWTIDEDHKLVNFIINNGLHSWPLVPKLAGPNENHMVRWSKIAAHFPGRTDNEIKNHWNTRIKKKMMLLGLEPVTHQKIDQKEHADDKNKTNLRPSSSKRPKRKENVEIMSLDSHAMEVMSKIEGNREEEKVALNDDIPPEFAMEEMPKAEGKKREDKVPWDDYTDTDLLNYYEMICWHLELKSWISQGINFGTSFHSSLSLDDSSHISIGESSYVEDNTLQLWVDSMNPIP 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1875 247 Gene3D - 11 82 - -
Dere02g1875 247 SUPERFAMILY Homeodomain-like 14 78 IPR009057 -
Dere02g1875 247 SMART sant 13 79 IPR001005 -
Dere02g1875 247 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 53 136 - -
Dere02g1875 247 CDD SANT 16 75 IPR001005 -
Dere02g1875 247 Pfam Myb-like DNA-binding domain 14 75 IPR001005 -
Dere02g1875 247 MobiDBLite consensus disorder prediction 92 123 - -
Dere02g1875 247 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 81 IPR017930 -
Dere02g1875 247 ProSiteProfiles Myb-like domain profile. 9 77 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1875 Dere-ChrDere02 18511432 18512531 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1875 1 123 MYB Transcription Factor Family AT5G16600 42.500 4.75e-35 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dere02g1875 Myb_DNA-binding 3.9e-11 CL0123