Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1840 ATGGCTGAGAATTCCAGTCATCCTGAAGAAACAGTGATCAATCACAGCTTTGAAGGGGAAGTTGAAGGAGAAGAGAGAGACCCAGAAAGCAATCCACTGAATGAGCCACTGCTCAAGAGGAATCGCACGCTGTCCTCCAATCCACTTGCTCTGGTTGGAGCCAAAGTCTCCTATATAGAAAGCTTGGACTACGAGATAAATGAGAACGATCTGTTCAAACATGACTGGAGGAGCAGATCAAGAGTTCAAGTTTTGCAGTACATATTCTTGAAATGGTCACTGGCTTTCCTCGTTGGACTTCTTACTGGTTTTATAGCCACCCTCATCAATCTCGCTATTGAGAACATTGCGGGTTACAAGCTTCTCGCTGTTGTCAAATACATCGACAAAGATAGGTACTTAGAGGGGTTCATATATTTCACTGGTATCAATTTCCTGTTGACATTGGTTGCTTCTGTCCTGTGTGTGTGTTTTGCACCCACAGCAGCTGGACCTGGTATACCAGAAATCAAAGCTTATCTTAATGGCGTCGATACTCCCAACATGTACGGTGCTACGACATTGATCGTCAAGATAATTGGAAGCATTGGAGCTGTCTCTGCAGGCTTAGATTTAGGAAAAGAAGGACCATTGGTACATATTGGCAGCTGTATTGCTTCCCTACTAGGCCAAGGAGGCCCTGACAAACACCGGATCAAATGGCGCTGGCTTCGGTATTTCAACAATGATCGTGATCGTCGCGATCTTATTACCTGTGGTGCTTCTTCAGGGGTTTGTGCAGCTTTCCGGGCCCCTGTTGGTGGAGTTCTGTTTGCTCTCGAAGAGGTGGCAACCTGGTGGAGAAGCGCTCTACTCTGGAGAACCTTCTTCAGCACAGCTGTGGTGGTGGTAGTGCTCAGGGCCTTCATTGAAATCTGCAACTCTGGCAAATGTGGCCTATTTGGCACAGGAGGGCTGATCATGTTTGATGTGAGCAATGTCACTGTTAGGTACCATGTGATGGATATCATCCCTGTTGCAATCATTGGCGTCATTGGTGGGGTATTGGGAAGCCTCTATAACTATCTTCTCCACAAGGTCCTCAGAGTATACAATCTCATCAATCAGAAGGGAAAAATGCATAAGCTCCTCCTCAGTCTTTCAGTTGCACTCTTCACATCAGTGTGCCAATACTGTCTCCCATTCCTAGCAAAATGCACCCCCTGCAATCCGTCGCTTCCAGAAGCTGTCTGCCCCACCAATGGACGGTCTGGAAATTTTAAACAGTTCAATTGCCCCAGTGGCCATTACAATGATCTTGCCACTCTGTTGCTTACCACTAATGATGATGCTGTTCGGAACATATTCTCAACCAACACTCCTCATGAATATCATCCATCTTCCCTCCTAATTTTCTTTGCACTCTACTGCATATTAGGATTAATTACTTTTGGAATTGCTGTGCCATCTGGACTCTTCCTCCCAATCATCCTCATGGGCTCAGCTTATGGCCGCCTTCTTGGCTACTTCATGGGACCTCATACTAATATCGACCACGGGTTGTTTGCTGTCCTTGGTGCAGCCTCCCTCATGGCTGGTTCAATGAGGATGACAGTATCCCTTTGTGTGATCTTCCTTGAACTGACCAACAATCTTCTGCTACTACCAATTACAATGATTGTTCTCCTAATAGCCAAATCTGTTGGAGACAGTTTCAACCCTAGCGTCTATGAGATTATACTGCACTTGAAAGGCCTTCCTTTCATGGATGCAAATCCTGAGCCATGGATGAGAAATCTCACAGTAGGTGAGCTTGTTGATGTAAAGCCAGCTGTAATTACCCTCCAAGGAGTAGAGAAGGTAGCTCGTATAGTAGAAGTCCTTAAAAACACTACACATAATGGCTTCCCTGTTGTGGATGAAGGAGTTGTACCCCCAACAGGACTGGGAAATGGGGCAAAAGAACTGCATGGACTGATCCTAAGAGCACACCTTGTCCAAGCGCTAAAGAAGAAATGGTTCTTGAAAGAAAGAAGGAGAACAGAGGAATGGGAAGTGAGAGAGAAATTTACCTGGGTAGACCTGGCAGACAGAGAAGGGAATATTCAGGAGGTGGCTGTGACAAGTGAGGAAATGGAGATGTTTGTTGATCTACATCCTCTCACCAATACAACTCCCTTTACAGTTCTGGAGAGCATGTCAGTGGCAAAAGCGATGGTCCTCTTCAGACAAGTAGGACTTCGCCATATGCTTGTCGTACCCAAGTATCAAGCATCTGGGGTATCCCCTGTAATTGGGATCTTGACCAGGCAGGATCTACTAGCCTACAACATTCTGACAGTTTTTCCTCACCTGGAAAAATCTAAAGGCAGAGAGAAGAGGAACTAA 2367 0.458 MAENSSHPEETVINHSFEGEVEGEERDPESNPLNEPLLKRNRTLSSNPLALVGAKVSYIESLDYEINENDLFKHDWRSRSRVQVLQYIFLKWSLAFLVGLLTGFIATLINLAIENIAGYKLLAVVKYIDKDRYLEGFIYFTGINFLLTLVASVLCVCFAPTAAGPGIPEIKAYLNGVDTPNMYGATTLIVKIIGSIGAVSAGLDLGKEGPLVHIGSCIASLLGQGGPDKHRIKWRWLRYFNNDRDRRDLITCGASSGVCAAFRAPVGGVLFALEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICNSGKCGLFGTGGLIMFDVSNVTVRYHVMDIIPVAIIGVIGGVLGSLYNYLLHKVLRVYNLINQKGKMHKLLLSLSVALFTSVCQYCLPFLAKCTPCNPSLPEAVCPTNGRSGNFKQFNCPSGHYNDLATLLLTTNDDAVRNIFSTNTPHEYHPSSLLIFFALYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGYFMGPHTNIDHGLFAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKSVGDSFNPSVYEIILHLKGLPFMDANPEPWMRNLTVGELVDVKPAVITLQGVEKVARIVEVLKNTTHNGFPVVDEGVVPPTGLGNGAKELHGLILRAHLVQALKKKWFLKERRRTEEWEVREKFTWVDLADREGNIQEVAVTSEEMEMFVDLHPLTNTTPFTVLESMSVAKAMVLFRQVGLRHMLVVPKYQASGVSPVIGILTRQDLLAYNILTVFPHLEKSKGREKRN 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1840 788 MobiDBLite consensus disorder prediction 1 37 - -
Dere02g1840 788 SUPERFAMILY Clc chloride channel 69 584 IPR014743 -
Dere02g1840 788 PRINTS Chloride channel signature 569 583 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Dere02g1840 788 PRINTS Chloride channel signature 160 177 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Dere02g1840 788 PRINTS Chloride channel signature 191 210 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Dere02g1840 788 PRINTS Chloride channel signature 255 274 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Dere02g1840 788 PRINTS Chloride channel signature 481 501 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Dere02g1840 788 PRINTS Chloride channel signature 513 529 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Dere02g1840 788 PRINTS Chloride channel signature 531 550 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Dere02g1840 788 SUPERFAMILY CBS-domain pair 586 769 IPR046342 -
Dere02g1840 788 Pfam Voltage gated chloride channel 148 562 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Dere02g1840 788 SMART cbs_1 718 771 IPR000644 -
Dere02g1840 788 SMART cbs_1 604 663 IPR000644 -
Dere02g1840 788 CDD CBS_pair_voltage-gated_CLC_euk_bac 602 769 - -
Dere02g1840 788 Pfam CBS domain 717 769 IPR000644 -
Dere02g1840 788 Gene3D Clc chloride channel 82 584 - -
Dere02g1840 788 PRINTS Plant CLC chloride channel signature 65 73 IPR002251 GO:0005247|GO:0006821|GO:0016020
Dere02g1840 788 PRINTS Plant CLC chloride channel signature 433 449 IPR002251 GO:0005247|GO:0006821|GO:0016020
Dere02g1840 788 PRINTS Plant CLC chloride channel signature 290 300 IPR002251 GO:0005247|GO:0006821|GO:0016020
Dere02g1840 788 PRINTS Plant CLC chloride channel signature 308 315 IPR002251 GO:0005247|GO:0006821|GO:0016020
Dere02g1840 788 PRINTS Plant CLC chloride channel signature 276 284 IPR002251 GO:0005247|GO:0006821|GO:0016020
Dere02g1840 788 CDD ClC_6_like 60 582 - -
Dere02g1840 788 FunFam Chloride channel ClC3 83 400 - -
Dere02g1840 788 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 30 773 - -
Dere02g1840 788 MobiDBLite consensus disorder prediction 13 33 - -
Dere02g1840 788 Gene3D - 585 776 IPR046342 -
Dere02g1840 788 ProSiteProfiles CBS domain profile. 715 779 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1840 Dere-ChrDere02 18163812 18167654 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1840 23 783 Ion Channels AT3G27170 81.209 0.0 1268