Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1837 ATGCGCATTAACCCGCGAAAAATGGTGAAATACTCGACAGAGCCTGACAACCCCACCAAGTCATGCAAAGCTCGAGGATCAGATCTTAGAGTTCATTTTAAGAACACAAGGGAGACAGCCTTTGCAATTAGGAAGTTGCCCTTGGGAAAAGCTAAAAGGTATCTGGAAGATGTTCTTGCTCACAAACAAGCAATTCCCTTTCGACGGTATAGTGGTGGAGTAGGTCGCACTGCTCAAGCCAAAAACCGTCATTCCAATGGTCAAGGGCGTTGGCCTGTCAAATCCGCCAAGTTTATCCTTGATCTGCTGAAAAATGCTGAAAGTAATGCGGAAGTGAAAGGTCTTGATGTAGATGCACTATACATTTCCCACATTCAGGTAAATCAAGCTCAGAAGCAGAGGCGCCGTACCTACCGTGCTCATGGGAGAATTAACCCATACATGTCATCACCCTGCCACATCGAGTTGATTTTGTCTGAAAAGGAGGAGCCAGTCAAAAAGGAGAGTTGTGCTTATGTGTATAAGTTTTGGCTGAATTTGATATATTTAACTGATGGATTTATTGGTAACGCAGCCCGAGACGCAGCTGGCCCCCAGGACCAAGAGCTCGTAGACTCGTGCACCCCGGTGTTTGTTCTTGAGATCAGTAGCTTCAGAATGATTGCATCCTTTATGTCCTTTAATTTTTATCAGCTCTTTGGGCCTTGTGCTCAAATATCTGGCATGCACAATTTCAGATTGACGCCTCTCTGA 753 0.4515 MRINPRKMVKYSTEPDNPTKSCKARGSDLRVHFKNTRETAFAIRKLPLGKAKRYLEDVLAHKQAIPFRRYSGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKESCAYVYKFWLNLIYLTDGFIGNAARDAAGPQDQELVDSCTPVFVLEISSFRMIASFMSFNFYQLFGPCAQISGMHNFRLTPL 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1837 250 Hamap 50S ribosomal protein L22 [rplV]. 7 161 IPR005721 GO:0003735|GO:0006412|GO:0015934
Dere02g1837 250 MobiDBLite consensus disorder prediction 1 21 - -
Dere02g1837 250 SUPERFAMILY Ribosomal protein L22 8 161 IPR036394 GO:0003735|GO:0005840|GO:0006412
Dere02g1837 250 CDD Ribosomal_L22 22 158 IPR001063 GO:0003735|GO:0005840|GO:0006412
Dere02g1837 250 Gene3D Ribosomal protein L22/L17 8 172 IPR036394 GO:0003735|GO:0005840|GO:0006412
Dere02g1837 250 NCBIfam 50S ribosomal protein L22 11 161 IPR005721 GO:0003735|GO:0006412|GO:0015934
Dere02g1837 250 ProSitePatterns Ribosomal protein L22 signature. 134 158 IPR018260 GO:0003735|GO:0005840|GO:0006412
Dere02g1837 250 PANTHER 60S RIBOSOMAL PROTEIN L17 8 169 IPR005721 GO:0003735|GO:0006412|GO:0015934
Dere02g1837 250 Pfam Ribosomal protein L22p/L17e 24 159 IPR001063 GO:0003735|GO:0005840|GO:0006412
Dere02g1837 250 FunFam 60S ribosomal protein L17 8 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1837 Dere-ChrDere02 18146537 18148942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1837 8 168 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 90.062 2.73e-107 305