Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1816 ATGATCGAGTGGTACTCAGAAGAGTCAGCGTGGGATCCATTCGGGGGGTCAAATACTGGAGAAGCCTCGGTGGATTTGAGGCTCGGAGAGAGCTCAAATTCAGTGGAGAAATCATATGCAGAGGCACAGCACAAGGCAAGAGTGCCAAAATCATCATCTTCATCAACGTCGTGTAGTGGAGCATCTAGAAGGAAGCGCGTGTACCACAAATCAGCGGAGAACGTGAAGTGCTCGGTGGATGGATGCAGCTTCGACCTGAGGAATTGCAGGGAGTATCACCGGCGGCACAGGGTGTGCCAACTGCACTCCAAAACCTCTGCTGTGTTGGTGAAGGGACAAGAGCAGAGGTTCTGCCAGCAATGCAGCAGGTTCGGTTTTCGAGTTAAATATGTTGTTTGGGTTTTGGGGAATCCCATGATGTTTCCAGAATGTTCTTGTTTCTGCAGATTTCAGTCGCTGGATGAGTTTGATGGGTACAAGAGGAGCTGCAGGAGACGTCTCGAGGGCCATAATAAGCGCAGAAGGAAACCTCGCCCTCCTCCTCTTTACTTCTCCGCGGATAGCACAGGACCCAGACTCCTACAATTTGGAAATCCTTCTGCTGATCCTTGTCTGAGTATGTGGGCTGCTGTGTCTCCCAAAGCTGGAGCTCAACCTGCGACCTATAATCGTGACCCGCCAATTTTGCCTAAGATGGACCAGCAAACTCTACTACGTCCCTTTGGCAACATACAGCATCTCCAGGATAAGCAAGTTCCGATGTTGCAGCCAAATGGGAACGGAGTGTGTGGAATGAGCATGTATCGTCATCACCCAGTTTCTGGTATGGCCACAGCCCCACTAGCAGAAGCTAGCAGAGATAGTTACCAGAAGATGACTTCGGATTCTGCTCTCTATCTTCTGTCAGCGCTTCAGGCACAAAGTTCCGAGTTTAGCATGGTGGAGTCTAGTATAAACTGTTCATTTCAGTCCCAACCTCCGTTAGAACATGTCCAATTTGATGATGATGCTGAGAAATGTTCGTGTTCGAGGAGTATGAAGAACGAGAGTATTGTTTCCAGATTGGGTTTAGATGCTAACCCAACCAACCTTTATTACAATGGGACGCTTCAGATGGGGGCTGAACTAATAGAAAATGGAGGGAGCTCGCTGACTTTCCCTTTTTCTGGGAGGAGCTAG 1179 0.4902 MIEWYSEESAWDPFGGSNTGEASVDLRLGESSNSVEKSYAEAQHKARVPKSSSSSTSCSGASRRKRVYHKSAENVKCSVDGCSFDLRNCREYHRRHRVCQLHSKTSAVLVKGQEQRFCQQCSRFGFRVKYVVWVLGNPMMFPECSCFCRFQSLDEFDGYKRSCRRRLEGHNKRRRKPRPPPLYFSADSTGPRLLQFGNPSADPCLSMWAAVSPKAGAQPATYNRDPPILPKMDQQTLLRPFGNIQHLQDKQVPMLQPNGNGVCGMSMYRHHPVSGMATAPLAEASRDSYQKMTSDSALYLLSALQAQSSEFSMVESSINCSFQSQPPLEHVQFDDDAEKCSCSRSMKNESIVSRLGLDANPTNLYYNGTLQMGAELIENGGSSLTFPFSGRS 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1816 392 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 35 312 IPR044817 GO:0003677
Dere02g1816 392 Pfam SBP domain 143 176 IPR004333 GO:0003677
Dere02g1816 392 Pfam SBP domain 77 124 IPR004333 GO:0003677
Dere02g1816 392 MobiDBLite consensus disorder prediction 39 60 - -
Dere02g1816 392 Gene3D - 68 164 IPR036893 GO:0003677|GO:0005634
Dere02g1816 392 ProSiteProfiles Zinc finger SBP-type profile. 74 177 IPR004333 GO:0003677
Dere02g1816 392 SUPERFAMILY SBT domain 75 126 IPR036893 GO:0003677|GO:0005634
Dere02g1816 392 SUPERFAMILY SBT domain 144 181 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1816 Dere-ChrDere02 17984467 17985797 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1816 14 196 SBP-box Gene Family AT5G50670 37.436 1.84e-31 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Dere02g1816 SBP 5.3e-07 No_clan