Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1806 ATGAAGCCAATGCTAAGTACATTCAATGACTCAAGTGCTTCATTAATCTGGCCAGTGCTGGCCTGGCCCATTCGACGGCGACGCCTAGGGTACAATATAAGTTTGCGGTTCTGGTCTAGGGTTTTTTCATTCGGGGGTAGTTCTGCATCTCCAGCATCAGCGGGCTCAGCAGCTATGGCTCCCAAGAGAGGTGCAAAAGCTCCAGTTGCGGCTGCAAAGAAGAAGCAGGACAAGGTGGTGAATCCGCTATTCGAGAAGCGTCCGAAGCAGTTTGGGATCGGAGGGGCATTGCCTCCTAAGAGAGACTTGACGCGATTCGTGAAGTGGCCCAAGACTGTTCAAATCCAGAGAAAGAAGAGGATCCTCAAGCAAAGGTTGAAGGTCCCACCAGCTTTGAACCAGTTTACCAAAACCCTAGACAAGAATCTCGCAACTAGCCTGTTTAAGATGCTCCTTAAGTACAGGCCTGAGGATAAAGCTGAAAAGAAAGAGCGTCTTTTGAAGAGGGCTCAGGCAGAGGCAGAAGGAAAAACTGTTGAAGCTAAGAAGCCTATTGTTGTGAAATACGGTCTTAACCACGTTACCTATCTTATTGAGCAGAATAAAGCTCAGCTGGTTGTGATTGCCCATGATGTAGATCCTATCGAGCTAGTTGTTTGGCTGCCAGCACTGTGCAGAAAGATGGAAATTCCCTATTGCATTGTCAAGGGCAAGGCACGCTTGGGATCGATTGTCCATAAGAAAACTGCATCGGTTTTGTGCTTGACAACTGTCAAGAATGAAGACAAATTAGAATTCTCTAAGATTCTCGAGGCTATCAAGGCCAACTTCAATGACAAGTACGATGAATACAGGAAGAAGTGGGGTGGTGGGATTATGGGTTCCAAATCCCAAGCCAGAACCAAGGCCAAGGAAAGGCTCCTTGCTAAGGAAGCAGCACAGAGAATGTCTTAA 954 0.4717 MKPMLSTFNDSSASLIWPVLAWPIRRRRLGYNISLRFWSRVFSFGGSSASPASAGSAAMAPKRGAKAPVAAAKKKQDKVVNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKTVQIQRKKRILKQRLKVPPALNQFTKTLDKNLATSLFKMLLKYRPEDKAEKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGSIVHKKTASVLCLTTVKNEDKLEFSKILEAIKANFNDKYDEYRKKWGGGIMGSKSQARTKAKERLLAKEAAQRMS 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1806 317 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 101 293 - -
Dere02g1806 317 Gene3D - 109 292 IPR029064 -
Dere02g1806 317 Coils Coil 160 180 - -
Dere02g1806 317 ProSitePatterns Ribosomal protein L7Ae signature. 225 242 IPR004037 GO:0042254|GO:1990904
Dere02g1806 317 PRINTS Ribosomal protein L7A family signature 183 203 IPR001921 -
Dere02g1806 317 PRINTS Ribosomal protein L7A family signature 88 105 IPR001921 -
Dere02g1806 317 PRINTS Ribosomal protein L7A family signature 125 144 IPR001921 -
Dere02g1806 317 PRINTS Ribosomal protein L7A family signature 149 162 IPR001921 -
Dere02g1806 317 PRINTS Ribosomal protein L7A family signature 276 296 IPR001921 -
Dere02g1806 317 PRINTS Ribosomal protein L7A family signature 105 122 IPR001921 -
Dere02g1806 317 PRINTS Ribosomal protein L7A family signature 244 268 IPR001921 -
Dere02g1806 317 PRINTS Ribosomal protein L7A/RS6 family signature 232 246 IPR018492 -
Dere02g1806 317 PRINTS Ribosomal protein L7A/RS6 family signature 187 201 IPR018492 -
Dere02g1806 317 PRINTS Ribosomal protein L7A/RS6 family signature 206 219 IPR018492 -
Dere02g1806 317 PRINTS Ribosomal protein L7A/RS6 family signature 222 232 IPR018492 -
Dere02g1806 317 FunFam 60S ribosomal protein L7a 109 292 - -
Dere02g1806 317 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 174 264 IPR004038 -
Dere02g1806 317 SUPERFAMILY L30e-like 147 288 IPR029064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1806 Dere-ChrDere02 17881975 17885712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1806 59 317 Cytoplasmic Ribosomal Protein Gene Family AT3G62870 84.942 4.07e-166 460