Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1787 ATGAGGAAAGAGGAAAGGAACAAGTACAGTGGAGGCACCAGGAAAATGACAGTGATGGAGCATATAGTGGGTGGAAGTCTAAATGGTGGTACTGTGAGAGCCAAGTTTAGCTTGGAAGAGCTTGCAAAGATCAGAGGCAATGCTATGTTACGCTACAAGGAGAAGAAGAAAACTCGAAGTTATGAGAAGCACATTTACTATGAATCGAGGAAGGCCAAGGCTGATATGAGAAAGAGGGTGAGGGGGAGATTTGTGAAGGGAAGTGATACAACAACAACAGAAGCTCAATTTTGGCCTCATGTTCATGTACTCAATCTGAATGAGCTGCTGTACAGTACTGATTGA 345 0.4348 MRKEERNKYSGGTRKMTVMEHIVGGSLNGGTVRAKFSLEELAKIRGNAMLRYKEKKKTRSYEKHIYYESRKAKADMRKRVRGRFVKGSDTTTTEAQFWPHVHVLNLNELLYSTD 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1787 114 Pfam CCT motif 45 86 IPR010402 GO:0005515
Dere02g1787 114 ProSiteProfiles CCT domain profile. 45 87 IPR010402 GO:0005515
Dere02g1787 114 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 38 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1787 Dere-ChrDere02 17690493 17691084 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1787 8 89 C2C2-CO-like Transcription Factor Family AT1G28050 55.422 9.81e-20 80.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Dere02g1787 CCT 1e-15 CL0281