Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1786 ATGATGCCCTTTCCCTGCGACTTCTGCCATTCCAAGCCGGCGCTGCTTTACTGTCGAGCCGATTCCGCCAAGCTCTGTTTACTGTGCGACCAACTCGTCCACTCCGCCAACATTCTCTCCCTCAAGCACCTCCGCTTTCAGATTTGCGACCACTGTCAAAACGACGCCGCTACCAAACGATGCTCTGCCCACAACGTTGTACTATGCCATGACTGTGATTCGAACGCTCACAATAACTCTTCGGCTTCCTCACTCCATGACCGCACCCCCATTGAAGGCTTCTCTGGCTGCCCCTCCATCATCGATCTTGCCTCCCTTCTTGGCCTCGTTTTGAAACCGAAAGATTTGGTCGATCACTGTGGACTCAAATTAAAGGACTTTCGGGATTCTGTGGTTCTAAATTCTCAGTCCTCTGTTTCTCCTGTGTTGTCGCAAGGTCGGAATCTGATGTCGGGAAAGCATAAGGACGAGGTGTATGAGCAGCTAGTGGAAATGGCTGGATTAGACAAGTGTGGAGCTGAAGTGGGTCCCGCAGCTTCACCGACTGGGCAGGCTCAACAAGAGGAGGTGGAGAGTCTTGAATTCAATGAAGGGAATGAGGATGACTTACTGCAGCAGCAAATGCCCTTCACTTCTTTGCTAATGTTGCCAAGTGATATAGACACGAGGGAAAACGATTGTGGAAGTGAAGGAGATCTTCTGTGGGATTGTAACCCAACATATCAGGAAACGCAGGTATGGGACTTTCAATTAGGAAAATCCAGAGATTATGGGGAAGAAAATGTAGAGGCATTTGAAGGTCTGGAAGATGCTTCCTTACCGATACCAAACTCGTTGCAGTATCTATGCAATATGAATGGCTCATCTATTGGTCATGATATTCTATCAAGAAATGGTGCACATGGGGAGGTAACAATGGAGGATGAAAAGATTTTAGTGTTGAAGATGTCAAGACAGTCACAGCTTTGA 969 0.4778 MMPFPCDFCHSKPALLYCRADSAKLCLLCDQLVHSANILSLKHLRFQICDHCQNDAATKRCSAHNVVLCHDCDSNAHNNSSASSLHDRTPIEGFSGCPSIIDLASLLGLVLKPKDLVDHCGLKLKDFRDSVVLNSQSSVSPVLSQGRNLMSGKHKDEVYEQLVEMAGLDKCGAEVGPAASPTGQAQQEEVESLEFNEGNEDDLLQQQMPFTSLLMLPSDIDTRENDCGSEGDLLWDCNPTYQETQVWDFQLGKSRDYGEENVEAFEGLEDASLPIPNSLQYLCNMNGSSIGHDILSRNGAHGEVTMEDEKILVLKMSRQSQL 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1786 322 Pfam B-box zinc finger 5 43 IPR000315 GO:0008270
Dere02g1786 322 SMART bboxneu5 1 48 IPR000315 GO:0008270
Dere02g1786 322 SMART bboxneu5 49 91 IPR000315 GO:0008270
Dere02g1786 322 CDD Bbox1_BBX-like 5 48 - -
Dere02g1786 322 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 5 280 - -
Dere02g1786 322 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
Dere02g1786 322 ProSiteProfiles Zinc finger B-box type profile. 6 48 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1786 Dere-ChrDere02 17686371 17687931 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1786 6 256 C2C2-CO-like Transcription Factor Family AT2G33500 37.643 1.25e-44 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Dere02g1786 zf-B_box 2.7e-05 No_clan