Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1779 ATGATGATGGATCAGGGAGAGAAGCTGCTTCGCAAAAACGAGGCCTGTGGCTTGGTGGCAGGTGTTGACGCTGAGCTTGGGCTTGTCACCGTGGCAGGGGACAGCACCATTAATCCCGGGTCGGGTCCTCGGATCCACGACCTTGGCCTTGTCGCTGCCGTTACCACTTCTTTCGGGACCGTTCATAGGAAGAAAAGGATGGCCAGGCAGAGGAGATCCTCCACCGTGACGATGAATCTCCCTCCTCCTCCTCCTCCTCCTCCTTCCTCTTCCTCGCACGTGCCTCTCTCCCCGCTTCGATCTTATACTCCTCTCCCTCCCGCACGTGAAATTGATCATAGGAGGTTGAGATTCCTTTTTCAAAAGGAGCTAAAGAACAGTGACGTAAGCTCCCTCCGAAGAATGGTGCTCCCAAAGAAAGCAGCAGAGGCTTTCCTTCCCGTCCTCGAGTCTAAAGAGGGAATTCCTATCAGCATGGATGATATTGATGGTCAACATGTCTGGAGCTTCAAATACAGGTTTTGGCCTAATAACAACAGTCGGATGTATGTACTTGAAAATACCGGAGAATTTGTTAGTACACATGGCTTGCGACAAGGGGATTCCATTGCAGTTTACCAAGATAATGAAAACCTTAATTATGTGATTCAGGCCAAAAAGGCTTGTGAACAAGACGATTTTGCGGGCGTAGCCAGTGATACCATCAGCGATATCTTTCTACATGATTTCGAGGTTAACAAATCAAATAGTCTGAGTTTGATGACCTATCCCACAATGAATGACACAGACATGTCATTCATCTATGAAACCACCTTCTCAAATGACTCCCCACTTGATTTTTTGGGGGGATCAATGACCAGTTTTTCAAGGATTGGACCAGTTGAGACCTTTGGCTCTGTTGAGAATTTGTCACTCGATGACTTCTATTAA 930 0.4742 MMMDQGEKLLRKNEACGLVAGVDAELGLVTVAGDSTINPGSGPRIHDLGLVAAVTTSFGTVHRKKRMARQRRSSTVTMNLPPPPPPPPSSSSHVPLSPLRSYTPLPPAREIDHRRLRFLFQKELKNSDVSSLRRMVLPKKAAEAFLPVLESKEGIPISMDDIDGQHVWSFKYRFWPNNNSRMYVLENTGEFVSTHGLRQGDSIAVYQDNENLNYVIQAKKACEQDDFAGVASDTISDIFLHDFEVNKSNSLSLMTYPTMNDTDMSFIYETTFSNDSPLDFLGGSMTSFSRIGPVETFGSVENLSLDDFY 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1779 309 Gene3D - 116 232 IPR015300 -
Dere02g1779 309 ProSiteProfiles B3 DNA-binding domain profile. 120 220 IPR003340 GO:0003677
Dere02g1779 309 MobiDBLite consensus disorder prediction 78 93 - -
Dere02g1779 309 MobiDBLite consensus disorder prediction 61 101 - -
Dere02g1779 309 SUPERFAMILY DNA-binding pseudobarrel domain 118 223 IPR015300 -
Dere02g1779 309 Pfam B3 DNA binding domain 120 217 IPR003340 GO:0003677
Dere02g1779 309 SMART B3_2 120 222 IPR003340 GO:0003677
Dere02g1779 309 CDD B3_DNA 118 220 IPR003340 GO:0003677
Dere02g1779 309 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 61 226 IPR044800 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1779 Dere-ChrDere02 17638693 17641301 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1779 1 309 B3 DNA Binding Superfamily AT3G26790 48.974 1.39e-90 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Dere02g1779 B3 9.5e-16 CL0405