LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere02g1741	ATGAACCCATTTTCGTCGTCGTCGTCCAAGGCAAAAAAGAAGCAAGCGGCGACAACAAGCACAGCCACAGCAACAGCAACGACACAAGAACAAAAACATGAAACGGCATGGGGAGGGAGGTACCTGGGAGTTCGGAGGAGGCCATGGGGAAGATACGCGGCGGAGATTCGAGACCCTTCCACCAAAGAAAGGCATTGGCTTGGCACCTTCGACACTGCTGAAGAAGCCGCGTTAGCCTACGACAGAGCAGCTCGGTCCATGCGCGGCTCACGTGCCCGAACCAACTTCGTCTACTCCGATACCCCGCCGGGTTCTTCCGTCACCTCCATTATCTCACCCGACGAACAAACCCACCAGAACCACGACTTCTCGTCTTTCTTCGACCCAAACTCGCTCAACCAACAATCCAACCCGATTCCACACCTCTCCGAATGCAATCTCTCGGACGGGTTCATTGGGTTCACGGATAGTAATACCTGGGCTTCACCTTCATCTGGGGTTTATGATTATCCACAACATCAAGTTCCCTCGATGGAGGCTCATAACATAACACCTTTCCAACAACTGTACGATGATAGTAACACTGAGCTTCCTCCATTGCCACCAGATATTACCAGCTCCGCGGGATACGAAATGGGACATGGGTTTTACGGTAACGAATTCGGGAATTCGGAGCAGAGCACCGGGGCAGCAACAAGCGGGGCATCGTTCTCGTACTTGGGTTTTGATTCGAATGATTACGTGCATAGCCCGATGTTCAGCACAATGCCACCGGTGTCAGATAAGGTGCCGGAGGGTTTTGATCTGGAAAATTCGCCTTACTTCTTCTGA	831	0.5211	MNPFSSSSSKAKKKQAATTSTATATATTQEQKHETAWGGRYLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGSRARTNFVYSDTPPGSSVTSIISPDEQTHQNHDFSSFFDPNSLNQQSNPIPHLSECNLSDGFIGFTDSNTWASPSSGVYDYPQHQVPSMEAHNITPFQQLYDDSNTELPPLPPDITSSAGYEMGHGFYGNEFGNSEQSTGAATSGASFSYLGFDSNDYVHSPMFSTMPPVSDKVPEGFDLENSPYFF	276

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere02g1741	276	Gene3D	AP2/ERF domain	39	98	IPR036955	GO:0003700\|GO:0006355
	Dere02g1741	276	FunFam	Ethylene-responsive transcription factor 2	40	98	-	-
	Dere02g1741	276	SMART	rav1_2	40	103	IPR001471	GO:0003700\|GO:0006355
	Dere02g1741	276	ProSiteProfiles	AP2/ERF domain profile.	40	97	IPR001471	GO:0003700\|GO:0006355
	Dere02g1741	276	MobiDBLite	consensus disorder prediction	1	34	-	-
	Dere02g1741	276	Pfam	AP2 domain	41	89	IPR001471	GO:0003700\|GO:0006355
	Dere02g1741	276	SUPERFAMILY	DNA-binding domain	40	98	IPR016177	GO:0003677
	Dere02g1741	276	PRINTS	Ethylene responsive element binding protein signature	41	52	IPR001471	GO:0003700\|GO:0006355
	Dere02g1741	276	PRINTS	Ethylene responsive element binding protein signature	63	79	IPR001471	GO:0003700\|GO:0006355
	Dere02g1741	276	CDD	AP2	40	96	IPR001471	GO:0003700\|GO:0006355
	Dere02g1741	276	PANTHER	AP2 DOMAIN CLASS TRANSCRIPTION FACTOR	17	172	-	-
	Dere02g1741	276	MobiDBLite	consensus disorder prediction	1	40	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere02g1741	Dere-ChrDere02	17308616	17309446	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere02g1741	25	268	AP2-EREBP Transcription Factor Family	AT5G13910	44.488	3.42e-57	181

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Dere02g1741		AP2	1.8e-13	CL0081