Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1736 ATGGCTTCTCTCCTCCCAATGCCAGACTTTTCCTCGCCCCTCATTCCCAAACTTAGCTCCTCCCCCAGAATTTGGAGTCTCTTCATTGTCACGTACCCTCTGCAGTTCAAAAACAACAAACGACGAGTAGTTTTGCCCCCTAATGCCGTCTACACCCAAAACCTTTCGGTTCCCTCACCCGCCAAATTGGCCAACAGGACAGAGAGAATTGAGCTCGAGAATGATCCTATTTCGGTTCTAAACGAGAGGATTCGGCGTGATTTCACCAAGAGAGAGGTTTCCAGGACGGTGATGGACTCGGAGGAGGCCGACAAGTACATCCAATTGGTGAAGGAGCAGCAGCAGAGAGGGTTGCAGAAGTTGAAAGGAGACAGAGCGAATAAGGAAGGTGGACTGAGCTACCAGGTAGATCCTTATACTCTTCGTTCTGGGGACTACGTTGTGCATAAGAAGGTGGGTATTGGGCGATTTGTTGGGATTAAGTTCGATGTTCCAAAGAATTCTACAGAGCCAATTGAGTATGTTTTTATAGAGTATGCAGATGGCATGGCAAAGCTTCCTGTTAAGCAGGCGTCTCGTATGCTTTATAGATACAGTCTTCCTAACGAAAATAAAAGACCTCGGACGTTGAGCAAATTGAATGATACTAGCGCATGGGAGAGAAGAAAGATTAAAGGAAAGGTTGCTATACAGAAGATGGTTGTTGACTTGATGGAACTCTATCTACATAGGCTAAAACAAAAAAGGCCCCCCTATCCAAAAGTTCCTGCCATGGCTAAATTTGCAGCTCAATTTCCTTATGAACCCACGCCTGATCAAAAACAGGCTTTCATTGATGTTGAGAGGGATTTGACAGAACGTGAAACTCCAATGGACCGATTGATTTGTGGGGATGTTGGTTTTGGCAAAACTGAAGTTGCACTACGTGCTGTCTTCTGTGTAGTCTCATCAGGGAAGCAAGCCATGGTTCTGGCACCAACAATAGTTCTTGCCAAGCAACATTTTGATGTTATTTCAGAGCGCTTCTCTTCATATCCTGATATTAAAGTTGGACTTCTGAGCAGGTTTCAGACAAAAGCAGAGAAAGAGGGACACCTGGACAAGATTAAAAACGGTGGCCTGGACATTATTGTTGGGACTCACTCTCTTCTAGGAAATCGGGTTGTGTATAACAATCTTGGCTTGCTTGTGGTTGATGAAGAACAGAGGTTTGGTGTCAAGCAGAAGGAGAAGATTGCTTCTTTCAAAACTTCTGTAGATGTTCTTACTCTTTCTGCAACGCCCATACCACGAACTCTTTATTTGGCATTGACAGGTTTTCGTGATGCTAGTTTAATTTCAACGCCACCTCCAGAAAGAGTTCCTATCAAAACTCATCTTTCTTCATTCAGTAAGGACAAAGTAATATCGGCTATCAAGTATGAGCTGGACCGTGGTGGTCAAGTTTTTTATGTTCTTCCTCGCATTAAAGGACTTGAAGAAGTTATGGAATTTCTTGAAAAGTCTTTCCCAAATGTGGAAATAGCCATTGCCCATGGGAAGCAATACTCAAAGCAATTAGAGGATACGATGGAGAAATTTGCACAAGGCGAAATAAATGTCCTTATATGCACCAATATAGTAGAAAGTGGGCTTGATATTCAAAATGCAAACACCATCATCATTCAGGATGTTCAACAATTTGGCCTTGCACAGCTGTACCAGTTGCGTGGAAGGGTTGGGCGGGCAGATAAGGAAGCTCATGCGCATTTATTTTATCCTGATAAATCTCTTCTCTCTGATCAAGCACTGGAAAGACTTGCAGCTCTTGAAGAATGCCGTGAACTTGGTCAAGGCTTCCAACTAGCTGAGAGAGACATGGGTATAAGAGGTTTTGGTACAATATTTGGTGAACAACAAACGGGAGATGTTGGAAATGTTGGCATTGATCTTTTCTTTGAGATGCTTTTTGAGAGCTTGTCCAAGGTTGAAGATCATCGTGTAGCTTCTGTACCTTATCAATCAGTACAGGTTGATATAAACATCAATCCTCATCTCCCTTCTGACTACATAAATTATCTGGAGAACCCTATGGAAATAATAAATTCAGCTGAGAGAGCAGCTGACAAAGACATCTGGAGTCTGATGCAATTTACAGAAAATCTGCGCCGCCAATATGGCAAGGAGCCTTACTCCATGGAGATTTTATTGAAGAAGCTTTATGTGAAAAGAATGGCGGCAGATATAGGTGTAACCAGAATTTACTCCGCTGGGAAGATGGTCCTTATGAAAACAAACATCAGTAAGAAGGTTTTCAAGCTGATGACAGAGTCAATGGCATCAGATTTGCATAAAAATTCATTGATTCTCGAGGGAGACCAAATCAAGGCTGAACTTCTCTTAGAGCTGCCAAAAGAACAACTCCTTAATTGGATCTTTCAATGCTTGGGTGAACTTCATGCTTCATTACCTGCCCTCATAAAGACTTCAGAGGAAATTGAGACGGCCAGTAGATGCAGTGACATAGTGCTCATGGAGAATGAGTTTTCAAGATATGCGGGGTGGGGCCAAGACACCCGGCAGGCGAACCGAGTCGGGGAGCCCCTCGCTGCCGCAGGCGGTGGCCACCGGCATATTCCAGATCAACACCGCCGTCGCTTCTTTCCGACGACTCGCCGATGGCACACAACGAGGCAGCGGATATTACAACTGGTGAAGGATACTTCTGCTGAGTTCAAGTCCTTGAGCGAATCTGATCGTTCTGCTGATGCCAATGTATTCACTTCTTGTCTCACTCTGTGTCTTTCATTAAACCAGCCTAGTGAGAAAATTCAAGATGCTAAGCTTATGAAAGATTTCCAAACCACATTGCGGGAGTTCCAGAAAGTACAAGAGCTTGCTTCTGAGCGCGAGTCCACCTACACCCCCTCTTCTTCTTTACCAACAAGCTTTGGTTCTGGTGAAAAATCTGGTGACACTGATCTGGAAAGCCAACCTTTTATGAGGGTGCAGAAGACGCAGGAAATACTTTTACTGGATAAGGAAATGGCCTTCAATGATGCCATGATTGAAGAAAGAGAGAAGGGCATTGAAGAGGTAGAAGAGCAAATTGGACAAGCCAATGAAATATTCAAGGACCTAGCTGTTCTGGTTCATGAGCCGGGTGTAGTGATTGATGATATCCAATCAAGTATTGACGCTTCTGCTGGTGCAACAACCCAAGCTAGAACTCAGCTGGCCAAGGCTTCCAAAAGCTTGAAATCCAGATCCTCACGGGTGATGTGGGTGGATGCTTGTAATCTCTGTGTTGGTGCTCGTCGTCGTATTTGTTGTACTCATTACCTAGAATGCAAGTGCATACAAACTGTTTTGGTAGGACTTTGCTCGACAGATTTGTCTTCCTCCTTCAGTAATACTTTTACCGAGATTGATGTAAATTTAAGAGAACAGTGCATTTTTTGTCTGAGGAGAACCCGTTCCATTGAAGACTGGTCAGCTTCAATTGAATATGAATCACAATCATCCTCTTTCAGATATGTCACACTACCACAGCAGGTGACGCTTCCCTTTCTTACTCTGAACTCTCTTCTTTTTCTGCTTAATTCACGCTCGGATCAAAGGAAGCTGCCAATGGCGGCCATTTTGTACAACATACTCTCATCTTTGGCTTTGGTCTCGCTCGGTCTCTACCATCTTATCTCCACCACCCTCTTCCACCTCAAATCCCCTCATTCCTACTCTGCCAAACCCTTCCACCCCTTCCTTGCCTCTGCCTCTGCCTCTTCCTCTTCCTCCCACCACCCCCACCGCCTCCGTCATCTTCCTCTCTACCTCATTATCCTCTCCCTCCTCCTCGCTTTCATCCATCAACTCATCGTTTCCTCTGAAACTGACCCTCTCGTCAAAGGCCACACCCCCGTTCACCGCTTCGTCTCTCTCCAATCCGCCGCCGTTCTCTTCCTCTTCCTCATCCTTGCCCTCTCTCTCCTCCTTTCCGAATCCTCCTTTCTTCTTCCCTTCTCCAACGATCTCATTTTCGCTCTCGCTTCTGTTCTTTTCTTCCTGCAATACTCCGTCTCTTCTGCCGCCGCCTCCGTCCAGATTTCCGATCTCGAGGCCAAATGCGACTCCGTTTCTGCCGGGATTTCCGCGTTCGCTGCGGTTCTGTGTCTACTTCTTGCTTTTCAGCCCAAGCTCTTTGTCGCGGATGTGGGCTTGGGAGCTGCAATCTGCTTGCGGGGTCTCTGGGTTTTTCAGACCGGGTTGTCTCTTTACGTTGATGCCTTTATCCCTGAAGGGTGTCATCGTTTGCTTGATGTGGTTGATGGGGTTGAGGGATCAACCAAGTGTGATCTTGAGGAATCCAAGTTGAGAGCTGTGGCTATTCTGGATCTTATTTTTTTGGTCCACGTGATGTTTGTGGTGTTCATTGTCATGATCACTTACGCTGGCGTTGCGAAGAGTGTAGGCGTCAGGAGAATGGGATCCTATGACAGCTTGCCCAACACTACCTCTCATTCAGAAAATAGTAGTCTTATCCAGATGAAAGCATTAACTGGCACGCAGGCTTGA 4551 0.4542 MASLLPMPDFSSPLIPKLSSSPRIWSLFIVTYPLQFKNNKRRVVLPPNAVYTQNLSVPSPAKLANRTERIELENDPISVLNERIRRDFTKREVSRTVMDSEEADKYIQLVKEQQQRGLQKLKGDRANKEGGLSYQVDPYTLRSGDYVVHKKVGIGRFVGIKFDVPKNSTEPIEYVFIEYADGMAKLPVKQASRMLYRYSLPNENKRPRTLSKLNDTSAWERRKIKGKVAIQKMVVDLMELYLHRLKQKRPPYPKVPAMAKFAAQFPYEPTPDQKQAFIDVERDLTERETPMDRLICGDVGFGKTEVALRAVFCVVSSGKQAMVLAPTIVLAKQHFDVISERFSSYPDIKVGLLSRFQTKAEKEGHLDKIKNGGLDIIVGTHSLLGNRVVYNNLGLLVVDEEQRFGVKQKEKIASFKTSVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERVPIKTHLSSFSKDKVISAIKYELDRGGQVFYVLPRIKGLEEVMEFLEKSFPNVEIAIAHGKQYSKQLEDTMEKFAQGEINVLICTNIVESGLDIQNANTIIIQDVQQFGLAQLYQLRGRVGRADKEAHAHLFYPDKSLLSDQALERLAALEECRELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEDHRVASVPYQSVQVDININPHLPSDYINYLENPMEIINSAERAADKDIWSLMQFTENLRRQYGKEPYSMEILLKKLYVKRMAADIGVTRIYSAGKMVLMKTNISKKVFKLMTESMASDLHKNSLILEGDQIKAELLLELPKEQLLNWIFQCLGELHASLPALIKTSEEIETASRCSDIVLMENEFSRYAGWGQDTRQANRVGEPLAAAGGGHRHIPDQHRRRFFPTTRRWHTTRQRILQLVKDTSAEFKSLSESDRSADANVFTSCLTLCLSLNQPSEKIQDAKLMKDFQTTLREFQKVQELASERESTYTPSSSLPTSFGSGEKSGDTDLESQPFMRVQKTQEILLLDKEMAFNDAMIEEREKGIEEVEEQIGQANEIFKDLAVLVHEPGVVIDDIQSSIDASAGATTQARTQLAKASKSLKSRSSRVMWVDACNLCVGARRRICCTHYLECKCIQTVLVGLCSTDLSSSFSNTFTEIDVNLREQCIFCLRRTRSIEDWSASIEYESQSSSFRYVTLPQQVTLPFLTLNSLLFLLNSRSDQRKLPMAAILYNILSSLALVSLGLYHLISTTLFHLKSPHSYSAKPFHPFLASASASSSSSHHPHRLRHLPLYLIILSLLLAFIHQLIVSSETDPLVKGHTPVHRFVSLQSAAVLFLFLILALSLLLSESSFLLPFSNDLIFALASVLFFLQYSVSSAAASVQISDLEAKCDSVSAGISAFAAVLCLLLAFQPKLFVADVGLGAAICLRGLWVFQTGLSLYVDAFIPEGCHRLLDVVDGVEGSTKCDLEESKLRAVAILDLIFLVHVMFVVFIVMITYAGVAKSVGVRRMGSYDSLPNTTSHSENSSLIQMKALTGTQA 1516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1736 1516 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 284 446 IPR014001 -
Dere02g1736 1516 SMART CarD_TRCF_2 140 242 IPR003711 -
Dere02g1736 1516 Pfam Helicase conserved C-terminal domain 470 576 IPR001650 -
Dere02g1736 1516 SMART tSNARE_6 1008 1075 IPR000727 -
Dere02g1736 1516 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 68 483 - -
Dere02g1736 1516 Pfam CarD-like/TRCF domain 141 241 IPR003711 -
Dere02g1736 1516 SUPERFAMILY t-snare proteins 884 1068 IPR010989 GO:0016020|GO:0016192
Dere02g1736 1516 Gene3D - 141 655 IPR027417 -
Dere02g1736 1516 SUPERFAMILY CarD-like 135 204 IPR036101 -
Dere02g1736 1516 CDD SNARE_Qa 1016 1074 - -
Dere02g1736 1516 MobiDBLite consensus disorder prediction 960 991 - -
Dere02g1736 1516 Pfam Family of unknown function (DUF716) 1336 1476 IPR006904 -
Dere02g1736 1516 Pfam Syntaxin-like protein 886 967 IPR006011 GO:0016020
Dere02g1736 1516 Gene3D - 1007 1099 - -
Dere02g1736 1516 Gene3D - 144 204 - -
Dere02g1736 1516 SUPERFAMILY TRCF domain-like 665 812 IPR037235 -
Dere02g1736 1516 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 318 591 IPR027417 -
Dere02g1736 1516 Gene3D - 205 448 IPR027417 -
Dere02g1736 1516 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 1013 1075 IPR000727 -
Dere02g1736 1516 CDD DEXHc_TRCF 256 448 - -
Dere02g1736 1516 SMART ultradead3 265 457 IPR014001 -
Dere02g1736 1516 Pfam DEAD/DEAH box helicase 291 429 IPR011545 GO:0003676|GO:0005524
Dere02g1736 1516 Coils Coil 1016 1036 - -
Dere02g1736 1516 Gene3D - 668 815 IPR037235 -
Dere02g1736 1516 Gene3D - 882 971 - -
Dere02g1736 1516 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 464 621 IPR001650 -
Dere02g1736 1516 SMART helicmild6 493 577 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1736 Dere-ChrDere02 17260800 17275173 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1736 886 1084 SNARE and Associated Proteins AT5G46860 50.485 4.17e-54 188