Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1729 ATGGGTTACCTTGACGCCGATCAGGATAACCCATCAAAGAGTTCAGCTCTGGCAACTGATGGTGATGCACATACTGATGCAGGAAATGATGTCAAATTAAGTTCTAGGGACCAAAGAGAAGCTCTACCAGGTGAGCCTAAGTGTACCATATGTGGTCGCTATGGTGAGTATATATGTGATGAAACGGATGATGATGTTTGCAGCTTGGAATGTAAACAAACACTGCTACACAGAACTGCCTACTCCCCGTTGCCTGCTGGTACTTGTCCATCTAAAAAGCTTGCTGCAACTGATGAGTGCTTTTATGTTAGGGATAGTGATTATAAATCAGGTACCCCATCTTCAGCTGGAGATCAGGCTGATATGCTTCGAAAGAAACTTGACATTCATGTGAAGGGTGATGTAGCAGCACCAATTTTATCATTCACTTCCTGTAACCTTCCTGATAAGCTCCTCCACAATATAGAAGCTGCAGGATATGACATGCCTACACCTGTCCAGATGCAAGCAATCCCATCTGCTTTGATGGGCAAAAGCATGCTTGTTTTGGCTGGTACAGGATCTGGAAAGTCTGCTTCATTTTTAATTCCGATAGTGTCTGGTTGTGCAAGTCATCGCCTTGAGTATGTGTCTGATAAGAAGAAGCCATTAGCCATGGTGTTAACACCTACGAGAGAGCTCTGTATACAGGTTGAAGAGCATGCTAAATTGCTTGGAAAGGGATTGCCTTTTAAAACTGCGCTTGTGGTTGGTGGTGATGCCATGGCTGGACAACTCTATCGCATTCAGCAAGGAGTGGAACTGATTGTGGGAACCCCGGGAAGGCTTGTTGATCTTTTAACGAAGCATGAGATTGACTTAGATGATGTGATGACATTTGTTGTGGATGAGGTTGACTGCATGCTGGAAAGGGGTTTCCGAGATCAGGTCATGCAGATATATAGGGCTATGTCCCAGCCCCAGGTTTTGATGTATTCTGCAACGATCTCACATGAGTTAGAGAAAATGGCAAACTCTCTTGCAAAAGGTTCTGTGGTTATATCTGTTGGTGAGCCCAATAGACCAAACAAGGCTGTGAAGCAGCTAGCTATCTGGGTTGAGTCAAAGCAGAAGAAGCAGAAGTTGTTTGACATTTTGTTGAGTAAGCAGCATTTTAAGCCCCCTGTTGTTGTATATGTGGGATCTAGACTTGGGGCAGATCTTCTGGGCAATGCCATTACAGTCAACACTGGAATTAAAGCACTGTCAATTCATGGGGAGAAGTCTATGAAGGAAAGGAGAGAAATAATGAGATCCTTTTTGGTGGGTGAGGTTCCTGTGGTTGTGGCAACTGGAGTATTGGGTAGGGGGGTTGATCTATTAGGTGTAAGACAGGTAATTGTGTTTGACATGCCTAATTCCATTAAGGAATATGTACATCAGATTGGAAGGGCATCTAGAATGGGAGAGGAAGGTCAAGCCATAGTTTTTGTGAATGAGGAGAATAAGAATGTCTTTGCTGAGTTGACTGAAGTCTTAAAATCTGCTGGAGCAGCTGTGCCTCGGGAGCTTGTCAATTCACGGTATACTAGGGGATTTTTCTCTGGTGGCAAGGCTCCAAAAAAGAGGAAGAATAGATCGTGA 1623 0.4405 MGYLDADQDNPSKSSALATDGDAHTDAGNDVKLSSRDQREALPGEPKCTICGRYGEYICDETDDDVCSLECKQTLLHRTAYSPLPAGTCPSKKLAATDECFYVRDSDYKSGTPSSAGDQADMLRKKLDIHVKGDVAAPILSFTSCNLPDKLLHNIEAAGYDMPTPVQMQAIPSALMGKSMLVLAGTGSGKSASFLIPIVSGCASHRLEYVSDKKKPLAMVLTPTRELCIQVEEHAKLLGKGLPFKTALVVGGDAMAGQLYRIQQGVELIVGTPGRLVDLLTKHEIDLDDVMTFVVDEVDCMLERGFRDQVMQIYRAMSQPQVLMYSATISHELEKMANSLAKGSVVISVGEPNRPNKAVKQLAIWVESKQKKQKLFDILLSKQHFKPPVVVYVGSRLGADLLGNAITVNTGIKALSIHGEKSMKERREIMRSFLVGEVPVVVATGVLGRGVDLLGVRQVIVFDMPNSIKEYVHQIGRASRMGEEGQAIVFVNEENKNVFAELTEVLKSAGAAVPRELVNSRYTRGFFSGGKAPKKRKNRS 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1729 540 FunFam DEAD-box ATP-dependent RNA helicase 41 28 83 - -
Dere02g1729 540 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 287 496 IPR027417 -
Dere02g1729 540 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 171 347 IPR014001 -
Dere02g1729 540 Gene3D - 350 523 IPR027417 -
Dere02g1729 540 MobiDBLite consensus disorder prediction 25 39 - -
Dere02g1729 540 SMART ultradead3 159 362 IPR014001 -
Dere02g1729 540 MobiDBLite consensus disorder prediction 1 39 - -
Dere02g1729 540 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 135 518 - -
Dere02g1729 540 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 128 349 IPR027417 -
Dere02g1729 540 SMART helicmild6 400 482 IPR001650 -
Dere02g1729 540 Pfam DEAD/DEAH box helicase 164 335 IPR011545 GO:0003676|GO:0005524
Dere02g1729 540 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 140 168 IPR014014 GO:0003724
Dere02g1729 540 Pfam Helicase conserved C-terminal domain 373 482 IPR001650 -
Dere02g1729 540 Pfam HIT zinc finger 46 72 IPR007529 -
Dere02g1729 540 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 358 521 IPR001650 -
Dere02g1729 540 Gene3D - 27 82 - -
Dere02g1729 540 CDD SF2_C_DEAD 359 491 - -
Dere02g1729 540 Gene3D - 109 349 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1729 Dere-ChrDere02 17226354 17228365 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1729 138 514 Eukaryotic Initiation Factors Gene Family AT3G19760 27.865 2.21e-52 182