Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere02g1716 | ATGACCAAGTCTTTCATCAGCTATGTGGACCTGAAGAAAGCCGCCATGAAAGACGACTTGGATCTGGAAGCTGGTCTTCCTCCATCAAATGTGGAACTTAGCTCTTCAACAACCCACATGGATACCGACATGGGTCTCTTCCTGGAAGAGGCCGAGAAGGTGAAAACGGAGATGGGGTATCTCCGGGACATTCTGGGTAATCTTCAGCAAGCCAATGAAGAAAGTAAATCCCTGCACAAGCCTGAGGCTATAAAAACCTTAAGGAACAGAATCAACGCAGATATTGTCACTGTGCTCAAGAAGGCTAGAACAATCCGGTCTCAATTGGAAGAAATGGACCGAGCTAATGCTGCCAATAGAAGGCTCTCTGGCCTCAAAGAAGGCACGCCTGCCATTTACAGAACCAGAATCGCGGTCACCAATGGCCTTCGCAAGAAACTGAAGGAGTTAATGATGGAGTTTCAGGGGCTGAGGCAGAGGATGATGACTGAGTACAAAGAGACAGTGGGAAGACGCTATTTTACTGTAACAGGGGAACACCCAGATGAAGAAGTAATTGAGAAGATCATCTCCAATGGGGAAGAGGAGTTCCTAAGCAAAGCTATACAAGAGCACGGGAGGGGAAAGGTTCTAGAGACGGTGGTGGAGATACAGGACAGGCACGATGCTGCCAAAGAGATCGAAAAGAGTCTTCTGGAGCTGCACCAGGTTTTTCTGGACATGGCGGTGATGGTTGAAACTCAGGGCGAAAAGATGGACGACATTGAACACCATGTGCTTCATGCTTCTCACTATGTCAAGGATGGGACTAAGAATCTACAGACTGCAAAGAAGTACCAGAAGAGCAGCAGAAAATGGATGTGCATTGGGATCATACTTCTCCTGATTCTCATTCTCGTAATCGTCATCCCCGTTGCTACCAGTTTCAGCAGTTCTTGA | 939 | 0.4739 | MTKSFISYVDLKKAAMKDDLDLEAGLPPSNVELSSSTTHMDTDMGLFLEEAEKVKTEMGYLRDILGNLQQANEESKSLHKPEAIKTLRNRINADIVTVLKKARTIRSQLEEMDRANAANRRLSGLKEGTPAIYRTRIAVTNGLRKKLKELMMEFQGLRQRMMTEYKETVGRRYFTVTGEHPDEEVIEKIISNGEEEFLSKAIQEHGRGKVLETVVEIQDRHDAAKEIEKSLLELHQVFLDMAVMVETQGEKMDDIEHHVLHASHYVKDGTKNLQTAKKYQKSSRKWMCIGIILLLILILVIVIPVATSFSSS | 312 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere02g1716 | 312 | FunFam | Syntaxin 132 | 207 | 307 | - | - | |
| Dere02g1716 | 312 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 214 | 276 | IPR000727 | - | |
| Dere02g1716 | 312 | ProSitePatterns | Syntaxin / epimorphin family signature. | 220 | 260 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
| Dere02g1716 | 312 | Gene3D | - | 210 | 309 | - | - | |
| Dere02g1716 | 312 | Gene3D | - | 44 | 172 | - | - | |
| Dere02g1716 | 312 | PANTHER | SYNTAXIN | 56 | 298 | IPR045242 | - | |
| Dere02g1716 | 312 | Coils | Coil | 140 | 160 | - | - | |
| Dere02g1716 | 312 | CDD | SynN | 44 | 201 | IPR006011 | GO:0016020 | |
| Dere02g1716 | 312 | Pfam | SNARE domain | 251 | 302 | IPR000727 | - | |
| Dere02g1716 | 312 | CDD | SNARE_syntaxin1-like | 213 | 275 | - | - | |
| Dere02g1716 | 312 | Pfam | Syntaxin | 47 | 249 | IPR006011 | GO:0016020 | |
| Dere02g1716 | 312 | SMART | tSNARE_6 | 209 | 276 | IPR000727 | - | |
| Dere02g1716 | 312 | SUPERFAMILY | t-snare proteins | 42 | 269 | IPR010989 | GO:0016020|GO:0016192 | |
| Dere02g1716 | 312 | FunFam | Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group | 41 | 172 | - | - | |
| Dere02g1716 | 312 | SMART | SynN_4 | 39 | 166 | IPR006011 | GO:0016020 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dere02g1716 | Dere-ChrDere02 | 17095993 | 17096931 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dere02g1716 | 1 | 312 | SNARE and Associated Proteins | AT1G08560 | 67.302 | 2.72e-139 | 394 |