Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1704 ATGGAAGAGCCGGTTGTGGTGAACAAAGGAGAAGATCAGCCTCTGGATTTGCCTCCAGGTTTCAGATTCCACCCCACGGATGAGGAGATCATCACTCACTATCTGACAGAGAAGGTGCTGAATAGCAGTTTCAGTGCAACTGCTATCGGAGAAGCTGATTTGAATAAGTGTGAACCTTGGGACTTACCCAAGAAAGCCAAGATGGGGGAGAAAGAGTGGTACTTCTTCTGCCAAAGAGATAGGAAGTATCCCACAGGCATGAGAACGAATCGAGCCACCGAGTCGGGGTACTGGAAGGCCACCGGAAAAGATAAAGAGATTTACAAAGGGAAAGGCAATCTCGTTGGGATGAAGAAGACCCTTGTGTTCTACCGAGGGAGAGCTCCCAAAGGAGAGAAAACCAATTGGGTTATGCATGAATTCAGATTGGAAGGCAAATTCGCAACTTACAATCTCCCCAAGGCTGCCAAGGATGAATGGGTCGTAAGCAGGGTATTCCACAAGAACACAGACATCAAAAAGAGCCCAATTCAAGGCCTTTTGAGGATGAACTCTCTAGGTGACGATTTCCTCGACTGTTCTTCACTCCCTCCTCTCATGGATCCTTCTCACAAGCCTGCCTATAGTGACGATGCCTTCAAGATGACCAACCCATCCCCACCGATATCATCTAAACCATCCGACGGTTATTATCTTCCCAACTTCTCCTTCACCAACAATCAGCAGCAGCTGATGCTGACGAAGCCTCAAGACCATAAGTCCTATGATATGATTCCCAACAACAATAATTACACCGCCAATCAAGCCAGTTCCAATTTCACTGACTCGCTCTCGCATCCTCAAATTCAAATCCAAAATCCCAGTTTCTCCTTCCAGCAGAATAATCCCGCAGGTTATGTGGGGAATGATCAGCAGGCGCTTCTCAGAGCATTCATGGCCAATAACAAGGATGGAGTATTTGGATTGGACAAGCAATGCAAGATGGAGCCATTGATGTCGTCCAACAATCAATCTGTAGTGAGTGCGTCGCAGGACACGGGTCTCAGCAACGACAGAAACACCGATACTTCCTCTGTTGTTTCGAAGCTCGACATGGGAAGGAATAAAGCATTGTACGAGGATCTCGAAGGTCCATCGGTTGGACCCCTTTCTGATTTGGAATGCCTGTGGGATGACTACTGA 1182 0.4738 MEEPVVVNKGEDQPLDLPPGFRFHPTDEEIITHYLTEKVLNSSFSATAIGEADLNKCEPWDLPKKAKMGEKEWYFFCQRDRKYPTGMRTNRATESGYWKATGKDKEIYKGKGNLVGMKKTLVFYRGRAPKGEKTNWVMHEFRLEGKFATYNLPKAAKDEWVVSRVFHKNTDIKKSPIQGLLRMNSLGDDFLDCSSLPPLMDPSHKPAYSDDAFKMTNPSPPISSKPSDGYYLPNFSFTNNQQQLMLTKPQDHKSYDMIPNNNNYTANQASSNFTDSLSHPQIQIQNPSFSFQQNNPAGYVGNDQQALLRAFMANNKDGVFGLDKQCKMEPLMSSNNQSVVSASQDTGLSNDRNTDTSSVVSKLDMGRNKALYEDLEGPSVGPLSDLECLWDDY 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1704 393 FunFam NAC domain-containing protein 100-like 26 172 - -
Dere02g1704 393 Gene3D NAC domain 26 173 IPR036093 GO:0003677|GO:0006355
Dere02g1704 393 SUPERFAMILY NAC domain 15 169 IPR036093 GO:0003677|GO:0006355
Dere02g1704 393 Pfam No apical meristem (NAM) protein 18 143 IPR003441 GO:0003677|GO:0006355
Dere02g1704 393 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 16 272 - -
Dere02g1704 393 ProSiteProfiles NAC domain profile. 17 168 IPR003441 GO:0003677|GO:0006355
Dere02g1704 393 MobiDBLite consensus disorder prediction 340 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1704 Dere-ChrDere02 16931695 16933274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1704 1 242 NAC Transcription Factor Family AT5G18270 67.200 6.23e-117 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Dere02g1704 NAM 2.4e-40 No_clan