Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1687 ATGGCAATTGCACGAACAGGAGTGTACGTCGACGACTATTTGGAGTATGCCAGCACATTGCCTGCTGAGCTTCAGAGGTTGCTGAATACCATCAGAGAACTCGATGATCGATCCCAATCTATGATAAACCAAACAAGGCAGCAGACAAAGTACTATTTGGGACTCTCATCACATGGCTATAAGAAGGGTACTCATAACAGTGGCCATAATTATAATAACAATCATATGAATGAAGAAGATGACATTGCAATTGAGAAAATGCGAAAAGAAATCGAGGCAAATCAGGGTAGTGCATTTAGTCTATGTACTGAGAAGGTATTATTGGCAAGGCAAGCATATGACCTGATAGATAGCCATGTAAAGCGACTTGATGAGGATTTGAACAACTTTGCTGAAGATCTAAAGCAAGAGGGGAAAATACCACCAGATGAACCAGCAATACTCCCCCCATTGCCTATAGTTCTCAAAAGTGAAAAACGCAAGGTTTATGGAACACCTCAACCTAAGAGACCTGATTACAGGGATAGGGACTGGGATAGAGAGCGTGGTAGGGACTTTGAGCTCATGCCCCCACCAGGAAGCCATAAAAAGGAGTATGCAGCTTCTATGGATTTTGATCAACCCATTGATCCTAATGAACCCACGTACTGTGTTTGTCATCAGGTGTCTTTCGGTGATATGATTGCATGTGACAATGAAAATTGCCAAGGAGGTGAATGGTTCCACTATGCTTGTGTTGGCCTAACACCTGAGACAAGATTCAAGGGAAAGTGGTATTGCCCGACCTGCAAATTGCTTCCACAGTGTCAATGA 813 0.4305 MAIARTGVYVDDYLEYASTLPAELQRLLNTIRELDDRSQSMINQTRQQTKYYLGLSSHGYKKGTHNSGHNYNNNHMNEEDDIAIEKMRKEIEANQGSAFSLCTEKVLLARQAYDLIDSHVKRLDEDLNNFAEDLKQEGKIPPDEPAILPPLPIVLKSEKRKVYGTPQPKRPDYRDRDWDRERGRDFELMPPPGSHKKEYAASMDFDQPIDPNEPTYCVCHQVSFGDMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTCKLLPQCQ 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1687 270 ProSiteProfiles Zinc finger PHD-type profile. 214 266 IPR019787 -
Dere02g1687 270 Pfam Inhibitor of growth proteins N-terminal histone-binding 9 130 IPR024610 -
Dere02g1687 270 SUPERFAMILY FYVE/PHD zinc finger 192 264 IPR011011 -
Dere02g1687 270 CDD PHD_ING 216 263 - -
Dere02g1687 270 MobiDBLite consensus disorder prediction 159 193 - -
Dere02g1687 270 PANTHER INHIBITOR OF GROWTH PROTEIN 2 264 IPR028651 -
Dere02g1687 270 SMART PHD_3 216 264 IPR001965 -
Dere02g1687 270 Pfam PHD-finger 216 264 IPR019787 -
Dere02g1687 270 Coils Coil 24 44 - -
Dere02g1687 270 SMART ING_2 9 130 IPR024610 -
Dere02g1687 270 CDD ING_plant 17 127 - -
Dere02g1687 270 Gene3D - 5 128 - -
Dere02g1687 270 MobiDBLite consensus disorder prediction 162 192 - -
Dere02g1687 270 FunFam PHD finger protein ING 208 266 - -
Dere02g1687 270 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 208 265 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1687 Dere-ChrDere02 16744002 16748187 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Dere02g1687 ING 4.4e-19 No_clan