Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1670 ATGGTCCCTTCTCTAAAGGCATTTAAGGAAGCTGCTGCGTCAAGTCTGAGTAGTTCCTTTGGCATTGGAGTGTCCTTTAGAGAATCAGCTGTGTCTGGTACTCTGAATGTGTGCAGCAAAGTGTTGTTCAGAAGGAATCCTTTGTCTAAAAGGAATCGAAACTCACAAGGGTGTTACTTGATCCCGTCTCTGGATGATGGGATAAGGATGATTTTGGAGCCTCCATATGGCTGCCAATCATGCCTTCTCCTCTTTCCTTTCAACTGTATTACTAAAGAAGGGGAAGAGAAGACGAGGACTGGGGTTTCTGCTTCTCCCTCTCAGACACCATTCCTTGAACTCCTTGCAATGGAAATTCACTTCCAGCAACCAAAGCAGCATCAGAAAGCAGTTGTTCCCATTAGCAAAGGCGGCAAATTCAAAGGGAGGAACAGAAACAGTGGCACAAACAAATTTGTTGGGGTAAGACAAAGGCCTTCTGGGAGATGGGTGGCTGAGATCAAAGACACAACCCAGAAGATAAGAATGTGGCTTGGCACGTTTGAGACTGCAGAGGAAGCAGCCAGGGCTTATGATAAAGCTGCTTGCCTTCTTCGTGGATCCAACACTCGCACCAATTTCATCACTCGTGTCTCCTTGGATTCTCCACTCGCTTCTCGGATTCGAAATCTGCTTAACAACAGAAAAGGAACTAAACAGCAACAAGATGTTGATGCCTCTTCCTCAAGGGTCAGCACCACTAGCAGTACTAGAACTGGTAGTACTGTTAACTCAAACTCAAGCAATAGTGACAAAAATGATAGCTCTCTTTCTAGTGGGAAAATTCAAAACACACAGTTATTGGGTGATGGATACAGACCCGATTTGAGCAACTGCAGAGAGGGGTTTGAGTTGGATCCTCAATCCAATGTTTCATGGGGTTTTGGACCTTTCATTGATCGATTTCCTTTTGCTCAAGTATTGGATGTACCGAAGTCTGATGGTGTTGCTGATACAGTTGAGTTAGAGCTTTCAGAATTTGAGAGGATGAAAGTTGAAAGACAAATATTAACTCCACTTTATGCAATTAATGGAGTGCATGAGTACATGGAAACTGTCCAGGACTCTAATGAAGAAGCTCTTTGGGATCTTCCAACCTTGTGAAAGTATTCAAAACAAAGACTTAACACAGGCATCAAGCTCAATGATCATGAATTTGACCCTCTAGTGACAACCCCATCTTCCTCGAACGATGGACTTCAAGAAGCTCTGCTTTTGTTTAAGAAACAACGTAGCAGGCGAGGCATGGAAGCTGCAAAGGTGACTGTGAAAGCTGTGGCTCTGATTACTGGAGATAACAACGTGAGAGGATCTCTTCAGTTTGTGCAGCACCCCGATGGGAATACCCATGTAAAAGGGAGGATCACTGGATTGTCCCCAGGCCTTCACGGATTTCATATTCATGCCCTCGGTGATACCACCAATGGCTGCAATTCCACTGGTCCTCATTTCAATCCACTCAAGAAGGACCATGGGGCTCGTACAGATGATGAGCGTCACGCTGGAGATTTGGGTAACATTGTTGCAGGCCCGGATGGAGTAGCTGATGTTTCAATCACTGACAGACAGATTCCACTAAGTGGCCTTCATTCCATACTTGGGAGGGCAGTCGTTGTGCATGCTGATCCTGATGATCTTGGCAGAGGTGGGCATGAACTTAGCAAGACCACTGGTAATGCAGGTGCAAGAGTAGGATGCGGTATCATTGGGCTCCAATCATCTGTTTAA 1767 0.4533 MVPSLKAFKEAAASSLSSSFGIGVSFRESAVSGTLNVCSKVLFRRNPLSKRNRNSQGCYLIPSLDDGIRMILEPPYGCQSCLLLFPFNCITKEGEEKTRTGVSASPSQTPFLELLAMEIHFQQPKQHQKAVVPISKGGKFKGRNRNSGTNKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTFETAEEAARAYDKAACLLRGSNTRTNFITRVSLDSPLASRIRNLLNNRKGTKQQQDVDASSSRVSTTSSTRTGSTVNSNSSNSDKNDSSLSSGKIQNTQLLGDGYRPDLSNCREGFELDPQSNVSWGFGPFIDRFPFAQVLDVPKSDGVADTVELELSEFERMKVERQILTPLYAINGVHEYMETVQDSNEEALWDLPTLXKYSKQRLNTGIKLNDHEFDPLVTTPSSSNDGLQEALLLFKKQRSRRGMEAAKVTVKAVALITGDNNVRGSLQFVQHPDGNTHVKGRITGLSPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGARTDDERHAGDLGNIVAGPDGVADVSITDRQIPLSGLHSILGRAVVVHADPDDLGRGGHELSKTTGNAGARVGCGIIGLQSSV 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1670 588 MobiDBLite consensus disorder prediction 500 514 - -
Dere02g1670 588 CDD AP2 151 207 IPR001471 GO:0003700|GO:0006355
Dere02g1670 588 Gene3D AP2/ERF domain 150 210 IPR036955 GO:0003700|GO:0006355
Dere02g1670 588 PANTHER SUPEROXIDE DISMUTASE CU-ZN -RELATED 426 584 IPR024134 GO:0005507
Dere02g1670 588 MobiDBLite consensus disorder prediction 494 514 - -
Dere02g1670 588 Pfam AP2 domain 151 200 IPR001471 GO:0003700|GO:0006355
Dere02g1670 588 MobiDBLite consensus disorder prediction 224 286 - -
Dere02g1670 588 PRINTS Ethylene responsive element binding protein signature 174 190 IPR001471 GO:0003700|GO:0006355
Dere02g1670 588 PRINTS Ethylene responsive element binding protein signature 152 163 IPR001471 GO:0003700|GO:0006355
Dere02g1670 588 MobiDBLite consensus disorder prediction 224 279 - -
Dere02g1670 588 FunFam ethylene-responsive transcription factor RAP2-11 150 209 - -
Dere02g1670 588 SUPERFAMILY Cu,Zn superoxide dismutase-like 435 584 IPR036423 GO:0006801|GO:0046872
Dere02g1670 588 ProSiteProfiles AP2/ERF domain profile. 151 208 IPR001471 GO:0003700|GO:0006355
Dere02g1670 588 Pfam Copper/zinc superoxide dismutase (SODC) 448 582 IPR001424 GO:0006801|GO:0046872
Dere02g1670 588 ProSitePatterns Copper/Zinc superoxide dismutase signature 2. 571 582 IPR018152 -
Dere02g1670 588 FunFam Superoxide dismutase [Cu-Zn] 434 586 - -
Dere02g1670 588 CDD Cu-Zn_Superoxide_Dismutase 436 579 IPR001424 GO:0006801|GO:0046872
Dere02g1670 588 Gene3D Superoxide dismutase, copper/zinc binding domain 433 587 IPR036423 GO:0006801|GO:0046872
Dere02g1670 588 SMART rav1_2 151 214 IPR001471 GO:0003700|GO:0006355
Dere02g1670 588 SUPERFAMILY DNA-binding domain 151 208 IPR016177 GO:0003677
Dere02g1670 588 PRINTS Cu-Zn-superoxide dismutase family signature 532 554 IPR001424 GO:0006801|GO:0046872
Dere02g1670 588 PRINTS Cu-Zn-superoxide dismutase family signature 557 583 IPR001424 GO:0006801|GO:0046872
Dere02g1670 588 PRINTS Cu-Zn-superoxide dismutase family signature 513 522 IPR001424 GO:0006801|GO:0046872
Dere02g1670 588 PRINTS Cu-Zn-superoxide dismutase family signature 477 499 IPR001424 GO:0006801|GO:0046872
Dere02g1670 588 ProSitePatterns Copper/Zinc superoxide dismutase signature 1. 477 487 IPR018152 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1670 Dere-ChrDere02 16630085 16639919 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1670 120 382 AP2-EREBP Transcription Factor Family AT5G19790 38.768 4.91e-40 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere02g1670 Sod_Cu 8.9e-45 No_clan