Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1641 ATGGCTGACTCACAACGTGACGCCGCTTCCGCAACTCGGCGAACTAAAGCGACGTCGGCAAAATGCACTGCTCCTGATGTGGCAGCAGCCGCCGTGGCCGGGCCTACTGCTCCCTGTGGGGCCTGCAAGTTCCTCCGGAGGAAGTGCATTAGTGGCTGCATCTTCGCACCCCACTTCAGCTCCGACCAGGGTGCCGCCCGCTTTGCGGCTGTGCACAAGGTGTTCGGGGCTAGCAATGTGTCCAAGCTTTTGTTGCATATTCCGGTGAACCGCCGTCATGAAGCGGTGGTTACTATATCCTACGAGGCTCAAGCGCGGCTGTCGGATCCTGTTTATGGCTGCGTGTCCACCATTCTAGCTTTGCAACAACAGGTGGCATCTCTGCAAGCGGAGCTGGGTATGGTGCAAAGTCAGCTGATGAATAGTAGGTTTGCATTTGCAAGTGCTGTACAGAGCTCACAGCAGCTGCAGCCAAACATGAATATAGGACTGCAGCCAGCGTACTCCAACAACTCATGTGCTTCGACTAATCTTATGAACATGAGCAGCAGCTTCGGCCCTTCAGGTTTCGACCTTGCAATGGAGGCTCCTCCGTCTTCTCACAGCTTGGACCCTCTCCAACTCTCTCGCTTGTCCCAGGACGAGGAAGACGATGAGCAAGAAAGTAGGATTCCCCATGTTTTCAACCATGAGACCCTTCACCCTTGA 708 0.5494 MADSQRDAASATRRTKATSAKCTAPDVAAAAVAGPTAPCGACKFLRRKCISGCIFAPHFSSDQGAARFAAVHKVFGASNVSKLLLHIPVNRRHEAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQAELGMVQSQLMNSRFAFASAVQSSQQLQPNMNIGLQPAYSNNSCASTNLMNMSSSFGPSGFDLAMEAPPSSHSLDPLQLSRLSQDEEDDEQESRIPHVFNHETLHP 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1641 235 ProSiteProfiles LOB domain profile. 37 139 IPR004883 -
Dere02g1641 235 Coils Coil 118 138 - -
Dere02g1641 235 PANTHER LOB DOMAIN CONTAINING PROTEIN 35 202 - -
Dere02g1641 235 MobiDBLite consensus disorder prediction 192 235 - -
Dere02g1641 235 Pfam Lateral organ boundaries (LOB) domain 38 136 IPR004883 -
Dere02g1641 235 MobiDBLite consensus disorder prediction 210 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1641 Dere-ChrDere02 16116545 16117857 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1641 1 222 AS2 family AT3G03760 55.870 1.65e-76 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Dere02g1641 LOB 3.7e-37 No_clan