Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1625 ATGGCTGAACGTGGCGGCGGAGATCGTGGAGGCTTCGGCCGTGGCTTTGGTGGTCGTGGTGGACGCGGTGACCGTGGCCGTGGAGGCCGCCGCAGAGGCCCTCGCCGTGAAGAGGAGGAAAAGTGGGTTCCTGTGACCAAGCTTGGCCGTCTTGTTAAAGAGGGAAGGATCCGTAGCCTCGAGCAGATCTACCTCCACTCTCTCCCAATCAAGGAATACCAGATCATCGATACCCTGGTTGGTCCCAGCCTCAAGGACGAGGTCATGAAGATCATGCCGGTCCAGAAGCAGACCCGTGCCGGTCAGAGGACCCGGTTCAAGGCTTTCGTTGTCGTCGGTGACGGCAACGGACATGTGGGACTCGGCGTGAAGTGTAGCAAGGAGGTAGCCACGGCCATTCGTGGCGCGATTATATTGGCCAAGCTTTCGGTGATTCCCGTGAGAAGAGGGTACTGGGGTAACAAGATCGGGAAGCCCCATACAGTTCCGTGCAAGGTCACCGGAAAGTGTGGTTCAGTCACGGTGCGGATGGTTCCTGCCCCTCGTGGTGCCGGGATCGTTGCTGCTAGGGTGCCGAAGAAGGTATTGCAGTTTGCAGGAATTGAAGATGTCTTCACTTCTTCGCGAGGGTCGACTAAGACTCTTGGGAATTTTGTCAAGGCAACTTTTGATTGTTTGCTGAAAACCTATGGATTCCTAACACCTGATTTCTGGAGGGAGACCCGCTTCACCAAATCTCCGTTCCAAGAGTACACAGATCTACTGGCAAAGCCAACAGGAAAGGCTCTAATCCTGGAGGATGACAGGGTAGACGCTTAA 819 0.5543 MAERGGGDRGGFGRGFGGRGGRGDRGRGGRRRGPRREEEEKWVPVTKLGRLVKEGRIRSLEQIYLHSLPIKEYQIIDTLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPDFWRETRFTKSPFQEYTDLLAKPTGKALILEDDRVDA 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1625 272 ProSitePatterns Ribosomal protein S5 signature. 101 133 IPR018192 -
Dere02g1625 272 Gene3D - 147 239 IPR014721 -
Dere02g1625 272 FunFam 40S ribosomal protein S2 147 240 - -
Dere02g1625 272 NCBIfam 30S ribosomal protein S5 37 244 IPR005711 GO:0003735|GO:0006412|GO:0015935
Dere02g1625 272 Pfam Ribosomal protein S5, C-terminal domain 168 239 IPR005324 GO:0003735|GO:0005840|GO:0006412
Dere02g1625 272 FunFam 40S ribosomal protein S2 41 146 - -
Dere02g1625 272 Gene3D - 41 146 - -
Dere02g1625 272 ProSiteProfiles S5 double stranded RNA-binding domain profile. 84 147 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Dere02g1625 272 SUPERFAMILY Ribosomal protein S5 domain 2-like 160 240 IPR020568 -
Dere02g1625 272 Pfam Ribosomal protein S5, N-terminal domain 84 148 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Dere02g1625 272 SUPERFAMILY dsRNA-binding domain-like 80 149 - -
Dere02g1625 272 PANTHER RIBOSOMAL S SUBUNIT 36 230 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Dere02g1625 272 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1625 Dere-ChrDere02 15952676 15954279 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1625 38 260 Cytoplasmic Ribosomal Protein Gene Family AT3G57490 90.135 4.52e-151 421