Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1618 ATGAGTTCGCAACATATCAACAATGGCGGTGATGGTCTTAGTGGGGATGTGAATCTTTTACCTCCAGTTCCCTCTCATGCTTCTTCTCAACTAACGCCCCAGCTTTCTCTGTCAAACACTCTTGGGGTGATGGGGCAGACTGGTGGTGAGATAGACTTTCAGATTCTGAGCCCTTCGTTTCAGCCTCAGGAGAACAGGGAAACAAAGAGAAGCAACAGTGAAGGTGATGGGTATTCCGGGGTTGAAAACAAGAGCCTGGCTTTTAAACTTGGCAAGGAGGAAATAGAAGCTAAGAACTCTCCTGGGGAGAGAAATGGGCACACCAAGCTCTGTGCTAGAGGCCACTGGAGGCCAGCTGAAGATGCCAGACTTAAAGAGCTCGTAGCTCAGTACGGTCCTCAAAACTGGAACTTGATCGCTGATCATCTCGAAGGAAGATCAGGCAAAAGTTGCAGACTGAGGTGGTTCAATCAGCTTGATCCTAGAATTAACAGGAGGGCATTTTCTGAGGAAGAAGAGGAGAGATTGTTATCAAGTCATCGAATGTACGGTAACAAATGGGCCATGATTGCCAAACTGTTTCCTGGGAGGACAGATAATGCAGTAAAGAACCACTGGCATGTGATCATGGCCAGGAAGAATAGAGAGCAATCAAGCGGTTGTAGGAGGAGAAGATGCTCTTCTGGAATCCCTCCAAAGGCTTTAAATTTGAGTCTCTCAAATAATGCAGTGAGTGAATCCACCATCTCCAGTAATCTCATAGACGAATCTGCCTCATCCTCCGCTGATCTCTCTCTCAGTCCTACTCTTTTCCCTAATTTGAGTCCCCTTGGCAATAGATCAGCAATGGGTCTATCTTTTGAAAGGAAGCTGAGAACTGGGGATGTGGGATTTGACAAGTTTTTTGGTAGATGGAAGGGATCGTATGAGGGAGGAGCATCCATGGGGAGGCTCATGGGCGTGGTGGACCAATCTAATTATTATTCGGATTCAAACTCAGAAATCTCAGTATCTGAGTCAGTGGCTACCAACAGGACCAACCTCTCAATTTCTGGGGAAAGTGAGAACGTGGGTGATAACATTAAAATGCCATTCATTGATTTCCTTGGAGTAGGAGCTGCATGA 1125 0.4631 MSSQHINNGGDGLSGDVNLLPPVPSHASSQLTPQLSLSNTLGVMGQTGGEIDFQILSPSFQPQENRETKRSNSEGDGYSGVENKSLAFKLGKEEIEAKNSPGERNGHTKLCARGHWRPAEDARLKELVAQYGPQNWNLIADHLEGRSGKSCRLRWFNQLDPRINRRAFSEEEEERLLSSHRMYGNKWAMIAKLFPGRTDNAVKNHWHVIMARKNREQSSGCRRRRCSSGIPPKALNLSLSNNAVSESTISSNLIDESASSSADLSLSPTLFPNLSPLGNRSAMGLSFERKLRTGDVGFDKFFGRWKGSYEGGASMGRLMGVVDQSNYYSDSNSEISVSESVATNRTNLSISGESENVGDNIKMPFIDFLGVGAA 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1618 374 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 113 159 IPR017930 -
Dere02g1618 374 SUPERFAMILY Homeodomain-like 113 206 IPR009057 -
Dere02g1618 374 MobiDBLite consensus disorder prediction 1 32 - -
Dere02g1618 374 Gene3D - 167 225 - -
Dere02g1618 374 ProSiteProfiles Myb-like domain profile. 113 159 IPR001005 -
Dere02g1618 374 CDD SANT 116 157 IPR001005 -
Dere02g1618 374 Gene3D - 113 164 - -
Dere02g1618 374 MobiDBLite consensus disorder prediction 58 81 - -
Dere02g1618 374 Pfam Myb-like DNA-binding domain 113 159 IPR001005 -
Dere02g1618 374 Pfam Myb-like DNA-binding domain 165 208 IPR001005 -
Dere02g1618 374 PANTHER MYB PROTEIN-RELATED 113 255 - -
Dere02g1618 374 CDD SANT 176 207 IPR001005 -
Dere02g1618 374 ProSiteProfiles Myb-like domain profile. 160 210 IPR001005 -
Dere02g1618 374 FunFam MYB transcription factor 113 164 - -
Dere02g1618 374 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 160 214 IPR017930 -
Dere02g1618 374 SMART sant 112 161 IPR001005 -
Dere02g1618 374 SMART sant 164 212 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1618 Dere-ChrDere02 15901503 15902888 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1618 112 374 MYB Transcription Factor Family AT1G69560 46.970 3.88e-71 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere02g1618 Myb_DNA-bind_6 3.9e-15 CL0123