Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere02g1608 | ATGGGAAGGCCTCCTTGCTGTGACAAAGTTGGGATCAAGAAGGGTCCATGGACACCTGAGGAGGATATTATCCTTGTTTCTTACATCCAAGAACATGGCCCTGGAAATTGGAGATCTGTTCCTACTAACACTGGGTTGTCAAGGTGCAGCAAAAGTTGCAGGCTTAGATGGACTAACTACCTCAGGCCAGGAATCAAGAGAGGCAACTTTACTCCTCATGAGGAAGGAATGATAATTCATTTGCAGGCTCTTCTGGGTAACAAATGGGCAGCCATAGCTTCGTACCTTCCTCAAAGAACAGATAATGATATAAAGAATTATTGGAACACACATCTAAAGAAGAAGCTGAAGAAATTTCAAGCAGCCTTGGACCCCCACCTTGTGTCATCAGACTCAGCATCCTCTGCTCAGTTTGTATCCAGGAGCTTTCATGACAGAACAAGTTTAGATATGAGCAGCACTTCATCTCTTAGGCTTAGTCAGTCTCAGTCTCAGTCCTCCTCCTCCACCTATGCCTCAAGCACTGAGAACATCTCACGCCTCTTACAAGGTTGGATGAGATCCTCTCCAAAGCCAGACACTACTCTTCCCAGAGGACCCAAAGACAAAGAGCTTCAACAAAACAACATTAACAGCTTTGAAAACACTAAGCCAATGGTGAAGTCCGCATCAGTGCCTGCTGCTCTAAATTTTGGGTCCCATCATCATACCAAAGATGAGCAAGAGGGTGGAGATATGGTGTCCCATGAAGAGTTTGATTCTATTTTGTCGTTCGAGAACCTAAACAGTGCTGCTTGGGACAAGTCCACTTGTGATTCTGTGCCTGACAAGAGTTCTGATGCTGCTGCCGATAAGGTTCATGATCAACAAAGATCAGACAGCAGTAGTGCTCCCCCATTGTCATTTCTTGAGAAGTGGCTGTTTGAGGAAAATGTGGGCCATGAGGAGATGATGGAACTATCCCCTATGTTCTAA | 975 | 0.4523 | MGRPPCCDKVGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLSRCSKSCRLRWTNYLRPGIKRGNFTPHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKLKKFQAALDPHLVSSDSASSAQFVSRSFHDRTSLDMSSTSSLRLSQSQSQSSSSTYASSTENISRLLQGWMRSSPKPDTTLPRGPKDKELQQNNINSFENTKPMVKSASVPAALNFGSHHHTKDEQEGGDMVSHEEFDSILSFENLNSAAWDKSTCDSVPDKSSDAAADKVHDQQRSDSSSAPPLSFLEKWLFEENVGHEEMMELSPMF | 324 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere02g1608 | 324 | Pfam | Myb-like DNA-binding domain | 14 | 61 | IPR001005 | - | |
| Dere02g1608 | 324 | Pfam | Myb-like DNA-binding domain | 67 | 112 | IPR001005 | - | |
| Dere02g1608 | 324 | CDD | SANT | 69 | 112 | IPR001005 | - | |
| Dere02g1608 | 324 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 66 | 116 | IPR017930 | - | |
| Dere02g1608 | 324 | CDD | SANT | 16 | 61 | IPR001005 | - | |
| Dere02g1608 | 324 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 9 | 65 | IPR017930 | - | |
| Dere02g1608 | 324 | Gene3D | - | 68 | 136 | - | - | |
| Dere02g1608 | 324 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR | 1 | 225 | - | - | |
| Dere02g1608 | 324 | SUPERFAMILY | Homeodomain-like | 11 | 108 | IPR009057 | - | |
| Dere02g1608 | 324 | Gene3D | - | 13 | 66 | - | - | |
| Dere02g1608 | 324 | ProSiteProfiles | Myb-like domain profile. | 62 | 112 | IPR001005 | - | |
| Dere02g1608 | 324 | SMART | sant | 66 | 114 | IPR001005 | - | |
| Dere02g1608 | 324 | SMART | sant | 13 | 63 | IPR001005 | - | |
| Dere02g1608 | 324 | MobiDBLite | consensus disorder prediction | 268 | 299 | - | - | |
| Dere02g1608 | 324 | FunFam | Transcription factor MYB60 | 68 | 138 | - | - | |
| Dere02g1608 | 324 | MobiDBLite | consensus disorder prediction | 185 | 205 | - | - | |
| Dere02g1608 | 324 | ProSiteProfiles | Myb-like domain profile. | 9 | 61 | IPR001005 | - | |
| Dere02g1608 | 324 | MobiDBLite | consensus disorder prediction | 153 | 173 | - | - | |
| Dere02g1608 | 324 | FunFam | MYB-related transcription factor | 13 | 66 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dere02g1608 | Dere-ChrDere02 | 15769437 | 15770742 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dere02g1608 | 1 | 148 | MYB Transcription Factor Family | AT5G62470 | 76.351 | 8.45e-82 | 250 |
Transcription factors information