Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1593 ATGGGGAGAAAGCGAAAACTCACGCCAAAATCTGCCGAATCCGTCGAACCCCCGCTGAAGCAACATCATCAACAACAGCAGCAGCAGCAGTATGAACCAGAATTGGACCAAATTGTTGAAGATCAAGATAATGGAGCCGAGTACGTGGAAGTTGAAGAAGAAGTGGAGGAAGAAGAGGAGGTAGAAGAAGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAGGGGGAACAAGACCAAGACGAAGATGGAGCTGACGATGATAACGTTAATCCCGATCACGCCCAAAATGCGAATGATCAGGCAGCCAAGGCCCAGTCGACATCAACGGCGGCAACATCGGTGACAGCTCAATATGGAAAGGATGACGACGACGAGGAGCCGATACAGAAGCTTCTGGAACCGTTTAGCAAGGAACAAGTAGTAAATCTGCTATGCGAAGCGGCGATTAAACATCGCGATGTTGCGGATCGGATCCGAAAGGTGGCGGATGAGGATCCCGTTCATCGGAAAATTTTCGTACACGGCCTCGGATGGGACACAAACGCGGAGACCCTCATCAACGTTTTCAAGCAGTACGGTGAAATTGAAGATTGCAAAGCTGTGTGTGATAAGGTATCTGGGAAATCTAAGGGCTATGGTTTTATCCTCTTCAAATCGCGTCGTGGAGCTCGCAATGCGCTGAAGCAACCACAGAAGAAGATTGGGAACCGGATGACGGCCTGCCAGCTGGCATCGATTGGCCCGGTTCAACAGCCAACCGCCGCACAATCAACACCAGCACAACCGGTGTCAGAGTATACCCAAAGGAAGATTTACGTTAGCAATGTTGGGGCCGAGTTGGATCCTCAGAAGTTGCATGTGTTTTTTTCGAAGTATGGGGAGATAGAGGAAGGACCGTTGGGACTTGATAAGCTGACTGGGAAACCAAAGGGGTTCTGCTTGTTCGTGTACAAGAGCATTGAGAGTGCCAGAAAGGCGTTGGAAGAGCCACACAAGGAATTTGAGGGCCATGTTTTGCATTGTCAGAAGGCAATAGATGGTCCGAAGCCAGGAAAGCCTCAATATCAGCAACATCAGAATCCTCAGAGAACTCAATTCCAGAGAAATGAGAACCCTACATTTGTTGGTGGGGCTGCCACCGGACAAGGGCACCTGATGGCGCCAGCAGGACCAGGAATTGGATTTAACCAGGGGGCAGCAGCTGCACAGTCACTGAACCCGGCTCTTGGCCAGGCATTGACAGCACTACTTGCAACTCAAGGGGCTGGCTTGGGGCTGACTAATTTATTGGGAACTCTAGGATCAGCTGCTGCAGTAAACTCAGGTGTTCCCGCTGCAGGCCATGGGATGCAGGGTGGATACAGTAACCAAGCAAATATAAGCCCTGGTGTCATTGGTGGATACGGAAATCAAAGTGGCTTACAGGGTGCATATCCAAACCAGCAGATGGGACAAAGTGGTTCTGGAAGAGGGCAGCATGGTGTTGGACAATATGGTGGCGTTGCCCCTTACATGGGGCACTAG 1530 0.5033 MGRKRKLTPKSAESVEPPLKQHHQQQQQQQYEPELDQIVEDQDNGAEYVEVEEEVEEEEEVEEEEEEEEEEEEEEEGEQDQDEDGADDDNVNPDHAQNANDQAAKAQSTSTAATSVTAQYGKDDDDEEPIQKLLEPFSKEQVVNLLCEAAIKHRDVADRIRKVADEDPVHRKIFVHGLGWDTNAETLINVFKQYGEIEDCKAVCDKVSGKSKGYGFILFKSRRGARNALKQPQKKIGNRMTACQLASIGPVQQPTAAQSTPAQPVSEYTQRKIYVSNVGAELDPQKLHVFFSKYGEIEEGPLGLDKLTGKPKGFCLFVYKSIESARKALEEPHKEFEGHVLHCQKAIDGPKPGKPQYQQHQNPQRTQFQRNENPTFVGGAATGQGHLMAPAGPGIGFNQGAAAAQSLNPALGQALTALLATQGAGLGLTNLLGTLGSAAAVNSGVPAAGHGMQGGYSNQANISPGVIGGYGNQSGLQGAYPNQQMGQSGSGRGQHGVGQYGGVAPYMGH 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1593 509 MobiDBLite consensus disorder prediction 18 35 - -
Dere02g1593 509 SMART rrm1_1 272 344 IPR000504 GO:0003723
Dere02g1593 509 SMART rrm1_1 172 244 IPR000504 GO:0003723
Dere02g1593 509 MobiDBLite consensus disorder prediction 347 368 - -
Dere02g1593 509 MobiDBLite consensus disorder prediction 1 125 - -
Dere02g1593 509 Coils Coil 48 83 - -
Dere02g1593 509 Gene3D - 251 382 IPR012677 -
Dere02g1593 509 Gene3D - 162 249 IPR012677 -
Dere02g1593 509 MobiDBLite consensus disorder prediction 478 498 - -
Dere02g1593 509 SUPERFAMILY RNA-binding domain, RBD 170 253 IPR035979 GO:0003676
Dere02g1593 509 SUPERFAMILY RNA-binding domain, RBD 254 370 IPR035979 GO:0003676
Dere02g1593 509 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 171 248 IPR000504 GO:0003723
Dere02g1593 509 MobiDBLite consensus disorder prediction 93 118 - -
Dere02g1593 509 MobiDBLite consensus disorder prediction 478 494 - -
Dere02g1593 509 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 271 347 IPR000504 GO:0003723
Dere02g1593 509 MobiDBLite consensus disorder prediction 36 89 - -
Dere02g1593 509 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 53 348 - -
Dere02g1593 509 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 273 342 IPR000504 GO:0003723
Dere02g1593 509 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 173 239 IPR000504 GO:0003723
Dere02g1593 509 FunFam UBP1-associated protein 2A 164 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1593 Dere-ChrDere02 15588124 15589653 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1593 270 456 C2H2 Transcription Factor Family AT2G19380 29.902 1.05e-11 65.5