Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1589 ATGATAAAACAGATAGCAAAGTTACGTGGCATGTGGGCCCCACCACTCATTAACGTCCATTTAAACGCCGCCGTCTATTCAACGCTGAGTATTGGAGTCAGTATAGCTATGTATCACGCAAAGAAGTTTTCCCCGGCAACTGTAGTGCCAAATAAAGCCCAAGGTGCTGCTGAACAGCTTGCAAATGTTGGGGATTTGAGTGGATCTGCAGTAAAAAATGCCACACCTGTTGGAGGAAGTGGGAAACAACGATTACGGTGGACGTCAGACCTTCACGACCGTTTTGTGGATGCCATTACACAACTTGGTGGACCAGATAGGGCAACACCAAAAGGTGTTTTGAGGGTGATGGGTGTACCTGGACTTACAATTTATCACGTTAAAAGCCATTTACAGAAGTATCGCCTTGCAAAGTACATTCCAGAATCTTCAGCTGATGAATCTAAAGATGAGAAAAGGAATTCTGGAGACAGTGTATCTGGCACAGATTCTTCCCCCGGATTGCAAATCAGTGATGCTCTGAGGATGCAGATGGAGGTTCAGAAACGTCTCCATGAACAGCTAGAGGTTCAGAAACAGTTACAAATGAGAATTGAAGCACAAGGTAAATACTTGCAGAAGATCATAGAGGAGCAGCAAAAACTAGGTAATACCTTGAGGGCCTCGGAAACACTACTATCATCAAAAGATGAGCAAGACCCTTCCCAGTCAGAACCTTCTGGCGAGGCCTCTGCAGAGACATTGTCTCCATTGAAAAAACAGAAAATTGATGATGGCTCCAAGAATGGCATCACGACCTTCCCAAGTGCCAACAATGACTGCAGAGAAGATTGA 834 0.4484 MIKQIAKLRGMWAPPLINVHLNAAVYSTLSIGVSIAMYHAKKFSPATVVPNKAQGAAEQLANVGDLSGSAVKNATPVGGSGKQRLRWTSDLHDRFVDAITQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQKYRLAKYIPESSADESKDEKRNSGDSVSGTDSSPGLQISDALRMQMEVQKRLHEQLEVQKQLQMRIEAQGKYLQKIIEEQQKLGNTLRASETLLSSKDEQDPSQSEPSGEASAETLSPLKKQKIDDGSKNGITTFPSANNDCRED 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1589 277 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 81 255 IPR044848 GO:0003700
Dere02g1589 277 SUPERFAMILY Homeodomain-like 81 136 IPR009057 -
Dere02g1589 277 MobiDBLite consensus disorder prediction 142 157 - -
Dere02g1589 277 MobiDBLite consensus disorder prediction 220 277 - -
Dere02g1589 277 NCBIfam myb-like DNA-binding domain, SHAQKYF class 82 137 IPR006447 GO:0003677
Dere02g1589 277 Pfam Myb-like DNA-binding domain 85 135 IPR001005 -
Dere02g1589 277 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 79 139 IPR017930 -
Dere02g1589 277 MobiDBLite consensus disorder prediction 142 169 - -
Dere02g1589 277 Gene3D - 81 140 - -
Dere02g1589 277 MobiDBLite consensus disorder prediction 220 244 - -
Dere02g1589 277 FunFam Myb family transcription factor 81 139 - -
Dere02g1589 277 Pfam MYB-CC type transfactor, LHEQLE motif 168 214 IPR025756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1589 Dere-ChrDere02 15558095 15562282 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1589 82 267 G2-like Transcription Factor Family AT4G13640 46.766 6.27e-52 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Dere02g1589 Myb_DNA-binding 2.7e-06 CL0123