Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1571 ATGGGAGGGACTAGGCTGCTTGTATCAGATTTTGTGTTGTCTTTCATGTGGGTATGGTCAGGGGTTCTGATTAAGATATTCGTAAACAGATATCTGGAGTTGAGTAATGAGCACCTCCGTGAGATAGTGAGGATTGTGATGACCATTGTTAACTCGTTCTTCTTTGCATTCCTTGGAAGAATTACCCATGGTGGCGCCTTCAATCCACTCAACGTATTTCCTGATGCTATTTCTGAGGATTCAAGCAAATTCCTTTACTGCGTCGGTGCTAGAATTCCCATTCAGGTTATTGGATCTGTCATTGGGGTTAGGCTCATTACTGATACACTTCCTGAAGTAGGATGGGGACCACGTTTGAATATTGACATTCATCGGGGTGCATTGACAGAAGGAATCCTGACATTTGTAGTTGTTACCATGTCGCTAGGGCTTGCCACAAAAATTCCTGAAAGTTTCTTCATGAAGACTTGGATCACCAGTGTCTGCAGGCAAGCACTTCATATACTTGGCTCTGATCTAACTGGTGGTTGTATGAACCCAGCCCTTGTAATGGGGTGGGCTTATGCTCGAGGGGATCACATAACCAAGGAGCACCTCCTCGTATACTGGCTTGCCCCTATAGAGGCATCTGTGCTGGCGGTGTTGACATTCAAATTACTAGTTCGGCCTGTAAAAGGAGACAAACCAGGCACAAAAAGTAAATCAGAGTGA 711 0.4487 MGGTRLLVSDFVLSFMWVWSGVLIKIFVNRYLELSNEHLREIVRIVMTIVNSFFFAFLGRITHGGAFNPLNVFPDAISEDSSKFLYCVGARIPIQVIGSVIGVRLITDTLPEVGWGPRLNIDIHRGALTEGILTFVVVTMSLGLATKIPESFFMKTWITSVCRQALHILGSDLTGGCMNPALVMGWAYARGDHITKEHLLVYWLAPIEASVLAVLTFKLLVRPVKGDKPGTKSKSE 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1571 236 PANTHER AQUAPORIN SIP2-1-RELATED 2 236 IPR044226 GO:0015267
Dere02g1571 236 Pfam Major intrinsic protein 6 216 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere02g1571 236 PRINTS Major intrinsic protein family signature 87 106 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere02g1571 236 PRINTS Major intrinsic protein family signature 160 182 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere02g1571 236 PRINTS Major intrinsic protein family signature 200 220 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere02g1571 236 PRINTS Major intrinsic protein family signature 129 147 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere02g1571 236 PRINTS Major intrinsic protein family signature 5 24 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere02g1571 236 Gene3D Glycerol uptake facilitator protein. 4 229 IPR023271 -
Dere02g1571 236 SUPERFAMILY Aquaporin-like 5 225 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1571 Dere-ChrDere02 15453384 15455309 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1571 1 236 Major Intrinsic Protein MIP AT3G56950 55.274 2.50e-92 270