Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1552 ATGGCATTCTCTTCCCTGATTTCCACTCTCCAAAACGAACTGAAAATTGAAGAGCCTGAATTCACTGAGGCGCGAATCGGAAACGAAGGCCTCACAAAACGCATCCTCAGGAAAGGGCTCTCCTGGCAAACTCCATCTCCTGGAGACCAAGTGGAAGTTCATTTCAGAGGGCAAGTTGACAATGGAGCATCTCTTGGTTCAAGTTACGATAATGGAGCCCCATTTCACTTCAAGCTGGGGCAATGTGAAGTTATCAAAGGTTGGGATGAAGGAGTTGCCACCATGAAAAAGGGGGAGAGAGCTATCTTCAAAATACCACCAAACTTGGCGTATGGGGAGAAAGGTTCTCCCCCATTGGTTCCTCCAAATGCAACTCTCATTTTTGAGATTGAGATGCTGTCTTGGATTACCATAAGGGACTTGACCGGGGATGGAGGAATCATGAAGAAGATATTAAGGGAGGGAGAGGGATGGGCCACTCCTAGAGACGCTGACCAGGTCTTAGTGACATATGAAGCAAGGCTAGAGAATGGCATGCTTGTCGATGATTCTAGTCAAGGTGTGGAGTTTAATTTAAGCGATGGCTATCTTTGTCCCGCCATGAGTATAGCCCTAAGAACAATGAGGAAGGGCGAGGAAGCAGAGCTTGCTTTAAGATTCTCTTATGGTGTGAGACAAAATTTCAACAGAACCAGTAAAACTGAAAAAGATGGCTGTACCCAACCAGATCTTAATTTAACAAATGTCAAACTTAAGCTAGTATCATGGAAAAGTGTAGTTGATGTCACAGGAGATAGGAAGATAGTTAAAAAGATTGAGAAAGCTGGAGAGGGGATTGACCGTCCTAATGAAGGATCACAAGTGAAAGTGATATATATGAGTAAACTAAAAGATGGAACAATTATTGAGAGGAAAGGATCAGAGGAAGAACCTTTTGAATTCACAACTCAGGAAGAACAAATACCTGAGGGGCTAGAACAAGCAATCATGACAATGAGAAAAGGAGAGAAAGCCATAGTGACTGTCACTGCCGAATATTTGTCTGACAAAGATCATTTAAAGGGAACCCCAGCTAATAACGTCCTTTATTATGAGATCGAATTGGTTGATTTCATCAAGGAGAAACCATTTTGGAAAATGGACACTCAGGAGAAAATAGAAGCTTGTGAGAGGAAGAAGCATGATGGAAATTTACTGTTTAAGGCTGAAAAGTTTAGGCGTGCATCCAACAAATATGAAAAGGCTGTAAAATGCATTGAGTTTGATCACTCATTCAGTGATGACGAGAAGCGTCGTGCAAGTGCATTACGGTTATCTTGTTATTTGAACAATGCTGCTTGTAAACTCAAGCTGGGGGAGTATACTGAAGCCTCCAAACTCTGTACTAAGGTTCTAGAACGGGATCCATTAAATGTGAAGGCTTTGTACAGAAGATGCCAAGCATACCTGAAAACATCAGACTTAGAGAAAGCTGAGGCTGACATTAATAGAGCCTTGACTATTGATCCAAACAACAGAGAAATGAAAGTTGAGTACAGGGAGCTGAAACTCAAGCAAAAGGAATACAGCAGATATGAAGCTGACATCTTCAGCACAATGCTTTCAAGGATGGGCTAG 1617 0.4218 MAFSSLISTLQNELKIEEPEFTEARIGNEGLTKRILRKGLSWQTPSPGDQVEVHFRGQVDNGASLGSSYDNGAPFHFKLGQCEVIKGWDEGVATMKKGERAIFKIPPNLAYGEKGSPPLVPPNATLIFEIEMLSWITIRDLTGDGGIMKKILREGEGWATPRDADQVLVTYEARLENGMLVDDSSQGVEFNLSDGYLCPAMSIALRTMRKGEEAELALRFSYGVRQNFNRTSKTEKDGCTQPDLNLTNVKLKLVSWKSVVDVTGDRKIVKKIEKAGEGIDRPNEGSQVKVIYMSKLKDGTIIERKGSEEEPFEFTTQEEQIPEGLEQAIMTMRKGEKAIVTVTAEYLSDKDHLKGTPANNVLYYEIELVDFIKEKPFWKMDTQEKIEACERKKHDGNLLFKAEKFRRASNKYEKAVKCIEFDHSFSDDEKRRASALRLSCYLNNAACKLKLGEYTEASKLCTKVLERDPLNVKALYRRCQAYLKTSDLEKAEADINRALTIDPNNREMKVEYRELKLKQKEYSRYEADIFSTMLSRMG 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1552 538 Gene3D Tetratricopeptide repeat domain 375 532 IPR011990 GO:0005515
Dere02g1552 538 SUPERFAMILY FKBP-like 13 134 - -
Dere02g1552 538 SMART tpr_5 472 505 IPR019734 GO:0005515
Dere02g1552 538 SMART tpr_5 389 422 IPR019734 GO:0005515
Dere02g1552 538 SMART tpr_5 438 471 IPR019734 GO:0005515
Dere02g1552 538 SUPERFAMILY TPR-like 379 533 IPR011990 GO:0005515
Dere02g1552 538 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 285 372 IPR001179 GO:0003755
Dere02g1552 538 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 48 136 IPR001179 GO:0003755
Dere02g1552 538 Gene3D - 138 257 IPR046357 GO:0003755
Dere02g1552 538 Gene3D - 258 374 IPR046357 GO:0003755
Dere02g1552 538 SUPERFAMILY FKBP-like 261 391 - -
Dere02g1552 538 FunFam Peptidylprolyl isomerase 377 532 - -
Dere02g1552 538 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 164 250 IPR001179 GO:0003755
Dere02g1552 538 Pfam Tetratricopeptide repeat 472 505 IPR001440 GO:0005515
Dere02g1552 538 PANTHER PEPTIDYLPROLYL ISOMERASE 24 134 - -
Dere02g1552 538 Gene3D - 8 137 IPR046357 GO:0003755
Dere02g1552 538 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 43 133 IPR001179 GO:0003755
Dere02g1552 538 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 281 369 IPR001179 GO:0003755
Dere02g1552 538 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 160 226 IPR001179 GO:0003755
Dere02g1552 538 SUPERFAMILY FKBP-like 141 223 - -
Dere02g1552 538 ProSiteProfiles TPR repeat profile. 472 505 IPR019734 GO:0005515
Dere02g1552 538 FunFam Peptidyl-prolyl cis-trans isomerase 23 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1552 Dere-ChrDere02 15243395 15247053 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1552 23 537 Calmodulin-binding Proteins AT5G48570 52.682 0.0 559