Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1543 ATGAGAGAGGAGGACTCGAATTGGTTCTCGAGATGGGAAGAGGAACTCCCTTCCCCTGAGGAACTCATGCCTCTCTCCCAAACCCTAATCACTCCTGATCTTGCCATGGCTTTCGACATCCGAAACCCCCACACCAATAGCCCTCACCATCAAATCCCTCAACCCCCACCTCCTTCGAATCCCTTACCTTCTCCTGGAAATCCCACCTCTGCTGAATTTGCCGATTCCGGCGAGTTGGGTTCTGGAACAGCAGGTGAAGAACCCGCACGAACTCTTAAGCGCCCTCGCCTCGTTTGGACTCCCCAACTTCACAAAAGGTTCGTGGATGCTGTCGCCCACTTGGGTATCAAAAACGCTGTGCCAAAAACGATAATGCAGCTGATGAGTGTGGATGGGTTGACCAGGGAAAACGTGGCTAGTCATTTGCAAAAATACCGACTTTATTTGAAGCGCATGCAGGGACTATCTGCTGGTGGCGGCGGCAGCGGTGGTGGCGGAGGCGCAGGCGGATTGGGTGCCTCCGCCGATCCTGCCACTGATCATCTATTTGCTAGCGCCCCCGTGCCGCCCCATTTCTTGCACCCTGCAGCTCGGCCCAATTCGGACCATTTCTTGCCGTTCGTGCCTGTTCCGGCAGCTCTGCAGCACCACCATCAACACCAGCAGCATATGGCAGCGGCTGTGGCGGCCGCCACCCATCCCCAATTGCAGCCGCAGTATCACAGGCAGGTGGGGCATTTTGGGTCGCCGGCAAATGGAAGCTTTGAGCATCCGTTTCTGACTAGGCAGCCTCAAACACTTCACAGGATGGGGGCCGCAATGCAGCACAATCCAGTACCTGGTTACGTAGAGGACATGGAATCAGCCAACGCGGCAGGAGGGAGAAAGGTTCTTACTTTATTTCCAACTGGAGATGATTGA 921 0.5537 MREEDSNWFSRWEEELPSPEELMPLSQTLITPDLAMAFDIRNPHTNSPHHQIPQPPPPSNPLPSPGNPTSAEFADSGELGSGTAGEEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSAGGGGSGGGGGAGGLGASADPATDHLFASAPVPPHFLHPAARPNSDHFLPFVPVPAALQHHHQHQQHMAAAVAAATHPQLQPQYHRQVGHFGSPANGSFEHPFLTRQPQTLHRMGAAMQHNPVPGYVEDMESANAAGGRKVLTLFPTGDD 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1543 306 Gene3D - 91 153 - -
Dere02g1543 306 MobiDBLite consensus disorder prediction 49 65 - -
Dere02g1543 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 99 150 IPR017930 -
Dere02g1543 306 FunFam Two-component response regulator 90 153 - -
Dere02g1543 306 Pfam Myb-like DNA-binding domain 98 146 IPR001005 -
Dere02g1543 306 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 3 265 IPR044841 GO:0003700|GO:0006355
Dere02g1543 306 MobiDBLite consensus disorder prediction 1 18 - -
Dere02g1543 306 NCBIfam myb-like DNA-binding domain, SHAQKYF class 95 147 IPR006447 GO:0003677
Dere02g1543 306 MobiDBLite consensus disorder prediction 1 23 - -
Dere02g1543 306 MobiDBLite consensus disorder prediction 36 93 - -
Dere02g1543 306 SUPERFAMILY Homeodomain-like 91 151 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1543 Dere-ChrDere02 15149087 15150007 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1543 1 306 G2-like Transcription Factor Family AT3G10760 60.571 1.51e-101 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Dere02g1543 Myb_DNA-binding 2.3e-08 CL0123