Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1537 ATGAAGTCTGGGTCACTAGATTACTGGAGGAATTACTTTCGTACTGCAAATTCTGATATATTCGATATAATTGACCATGCGATCATGGTGGCCGTTTCGGATTGTCCTAAGGAGTTTAGATTGCGAAGAGATGGAATTGCAGAACTGTTGTTTTCTTGTAGATTGACTCGTTGTGTGGGGTGTGACCGAGTGGAGTTAGCGGTGTCTGGTGATGAAGAGGAAGATGGAGGATGTAAGAGTGGTTTTGATCGAGATGCTACTGAATTGGAAGCAGGAGCTAGTAAAGAGAGCAAGGTCAACAGTAGTAGAGGCGATCATGGAGAGATGAACAGGAACCAAGTTAGTAATTTTAGCTTTGGAGAAGCTGAGGCATTGACTGATGAGATTGAAGAAGAGTCTCAGATGGTTGGGGAAGTTTTGAGGATCAAAGAGATTCTCCATAACAGCGAAGAAGAGTCTGATTCAGTGTTATTTGAGTCATTGAGGAGGCTCCAGCTGCTGGAACTGACCGTGGATCGTCTTAAGGGAACTGAGATTGGAAAGGCTGTTAATCCTCTTAGAAAGCACGGATCAAAGGAGATTCGTCAACTTGCACGGACTCTTATCGAAGGCTGGAAAGAAATGGTAGATGAATGGGTCAAGGCCACATCAGCTATTGCAGGTTCAGAACAAGGTACCCCAGATTCAGTAAATCCATCTGTTGTCGACGAAGAGGAAGGGCTTCCATCACCTCCTATGGATGAAGGGGCTTTCTTTGCAGCTCCAACTGCCTCAATAGAACTCTCACAGTTCTTTGATGGCATGGATGATGATGGAAATTTCCGACAGAGTGGGGAATTCACCAAGACCCATGAGCATATCAGAAAACCATCTATGGACCATCAAAACATGGCAAAGAGGAAACCACAGGTTTCCAATGAGGCCAAGGAGTGTAAAAATCATCAAGTAAAGAAAAATGAGGTTGCTGTGAGACAAAATAAACCGGTCAATGCTGATTCTGGCCCTGGCAGACCACCAAAATCGAGCGTGCAGCAAAAAATGAACATGGGGCCAAAGATGCAGCAGAAAGTAGATAGGAGTGCTATCCCAAAAAGGCCTTTCGTTACTCAGCAAGATAAATTCAAGTGTTCCGACGATGCTTCAGTCCAAGTGAAGCTAGAAGCCACTAAGAGGAAACTTCAGGAGTCTTATCAACAAGCTGAAAATGCCAAGAGACAGCGGACAATACAGGTTATGGAGTTGCATGATCTCCCAAAGCAAGGGAATGGTCACAGAAATCCACATTTCAAAGGCGGGTACAATAACAAGCACTGGGCTCATGGACGAAGATAG 1332 0.4459 MKSGSLDYWRNYFRTANSDIFDIIDHAIMVAVSDCPKEFRLRRDGIAELLFSCRLTRCVGCDRVELAVSGDEEEDGGCKSGFDRDATELEAGASKESKVNSSRGDHGEMNRNQVSNFSFGEAEALTDEIEEESQMVGEVLRIKEILHNSEEESDSVLFESLRRLQLLELTVDRLKGTEIGKAVNPLRKHGSKEIRQLARTLIEGWKEMVDEWVKATSAIAGSEQGTPDSVNPSVVDEEEGLPSPPMDEGAFFAAPTASIELSQFFDGMDDDGNFRQSGEFTKTHEHIRKPSMDHQNMAKRKPQVSNEAKECKNHQVKKNEVAVRQNKPVNADSGPGRPPKSSVQQKMNMGPKMQQKVDRSAIPKRPFVTQQDKFKCSDDASVQVKLEATKRKLQESYQQAENAKRQRTIQVMELHDLPKQGNGHRNPHFKGGYNNKHWAHGRR 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1537 443 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 127 221 IPR035441 -
Dere02g1537 443 SMART TFS2_5 136 211 IPR003617 GO:0005634
Dere02g1537 443 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 3 430 IPR044805 -
Dere02g1537 443 MobiDBLite consensus disorder prediction 303 321 - -
Dere02g1537 443 MobiDBLite consensus disorder prediction 219 249 - -
Dere02g1537 443 MobiDBLite consensus disorder prediction 417 443 - -
Dere02g1537 443 MobiDBLite consensus disorder prediction 292 350 - -
Dere02g1537 443 Coils Coil 383 410 - -
Dere02g1537 443 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 134 222 IPR035441 -
Dere02g1537 443 MobiDBLite consensus disorder prediction 89 113 - -
Dere02g1537 443 CDD TFIIS_I 138 210 - -
Dere02g1537 443 Pfam TFIIS helical bundle-like domain 161 209 IPR017923 -
Dere02g1537 443 ProSiteProfiles TFIIS N-terminal domain profile. 137 212 IPR017923 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1537 Dere-ChrDere02 15084920 15087883 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Dere02g1537 Med26 5.7e-12 No_clan