Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1535 ATGGCCACTCAGAAAAACCAACACGTAAAGCAGACTTCATCAGCTGCTGCTGCCTCATCTGTCACTTCATGTCGAAAGAAGAAGAATGAGGAAGCTTCTTTCTTTGAGGATTTGAAGGATCATGTGGATGAGTTCATCCATGCTTCTATGGATGAACACAAAACTTGCTTTAAGAAGACCATTCAAAAGATGTTTGGTTTGTCCAAAGTTGTTGCAGAAAGGAACTCTGATACTACTAAAGAAGTTGAAAGCTCTCTGCCTCTTGGGACAACTGTAGAAGACACAGCACACACTAGTCGATCCTCGCTGTTCTTCATCAAAGTTCAAGTCTTTTTTCAGAAAACAAAACATTCACTAATGGAAGATGATGAATTTTTCGACCCAACAGACCAATGTTCTCAAGGTTCTTCGTCCGAAACTTACCTGCTTGGCTTTGTCTTCGCCAACATCGTTGGGATTAAACACTATTCCGGTACCATCAGTGGCCGTGAAATGGTGGGTCTGGTCCGTGAACCTCTCAATCCCTACGATGAGAACGCCATTAAGGTCCTCAACACTCGAACAGTTCAGGTTGGACATATTGAGCGCTCCGTCGCAGCCGTATTGTCTCCCTTGATAGACGCCAGCCTAATTGCCGTGGAAGGCATCGTGCCCAAAATGCACTCTGGTAACAAATTCAAAATTCCTTGTCAAATTCATATTTTTGCAGCGATTGAGACTTTTCCAATTGTTAAAGATGTGATTTCAGAAGGTGGGTTGACGTTAATTTCGGAATCTGATGTATCGTTTACGTTGTCAGAGTCTATGGCTGTGAAAGAGAGGAGGGCTAAGAAAGAGTTTAAGAGTGTAGATGAGATTTTTAAGTTGGTCGATGAGAGTGTCAGCAAAAGGTGTGCATTGGAAGCGTTGGAGCCCCCTAGAAGTGTCATTAAGTCTGATCTTTTTTTACATCAGAAGGAAGGGTTGGGGTGGTTAGTTCATAGGGAGAATTCTTGTGAGTTGCCGCCATTTTGGGAAGAAAAAGATGGAACCTATGTGAATGTCTTGACTAATTATCATACGGATAGAAGGCCGGAGCCTCTGCGAGGTGGTATTTTAGCAGATGATATGGGATTGGGCAAGACCTTAACTTTACTTTCTTTAATTGCTTTTGATAAAGATCCTAGTGCTCGAAACATGAATGGAGGGAAGCATGATGAAATGGGGGAGCTTGATGAAGGATTCTCTGTCTCAAGTGGTAAGACGGGTAAGAGGAGAAGAACAAGTAAACAGGCCACTGGATCACAAAAAAGACGCAAGACTGAGAGTACTCCGTCAGGGGGCCCTGTTAATGAAATGTCTGTTGTAGATGGCATATTGTCAACCGGCATGGATATAAAGACAACATTGGTTGTGTGTCCCCCTTCGGTATTTTCAACATGGATAACACAGCTTGAACAACATACTAAGTCAGGCACATTGAAGACATACATGTATTACGGTGATAGAAGAACCAAGGATGCTGAGGAACTTAAGATGTATGACTTAGTATTAACCACATATACTACTCTAGCTATTGAAGAATCTTGGTCAAACTCACCAGTAAAGAAAGTTGAGTGGTGGAGGGTCATTTTGGATGAAGCACACGTAATCAAGAATGTCAATGCTCAACAAACTCAAGCTGTCATGAATCTGATAGCTAGGCAGAGGTGGGCTGTTACAGGGACACCAATTCAAAATGGCTCATATGATTTATTTTCTCTCATGGCATTTTTACGCTTTGAACCATTTTCAATAAAGAGCTATTGGCAGAGCTTAGTGCAACGTCCTCTTGCTCAGAACAACATGAGTGGACTCTCTCGTTTGCAGGTTTTGATGGCAACAATTTCATTACGAAGAACAAAAGATAAAGCATTAGAAGGATTGCCTCCAAAAACCATGGAGACTTATTATGTTGAACTTCGTGGGGAAGAACGGGAACTGTATGATCGGATGGAGGGGGAGGCAAAGAACATAGTACAGGGTTATATAAATGATGGAAGTTTAATGCGCAACTATTCCACTGTGCTCAGTATAATTTTACGGCTTCGCCAAATTTGTACTGATATGGCATTGTGCCCTTCAGATCTTAAATCTTTACTCCCTTCGAATAGCATTGAAGATGTTTCCAATAACCCGGAGTTGCTGCAAAAGTTAGTTGAGGTGTTACAAGATGGTGAAGATTTTGACTGTCCAATATGTATTTCTCCACCAACTGATGTTGTAATTACGTGCTGTGCTCACATTTTCTGCCAAGCCTGTATTCTGAAAACTCTACAGCACAGCAAATCCTGTTGTCCCCTTTGCCGTCACCCCCTCACAGAATCTGACTTGTTCTCTGCCCCTCCTCAATCATCTGAGGCTGATAGTACTGGACTCTCCTCACACGAAACAAGCTTGTCCTCTAAAGTGTCTGCTTTGATTAAACTTCTTGTAGCCTCAAGGGATCAACATCCAGCTACAAAATCAGTTGTGTTTTCACAATTTCGTAAGATGTTGATTTTATTAGAAGAGCCACTAAAAGCAGCTGGTTTCAAGACTCTGCGCCTTGATGGGTCCATGAACGCTAAACGAAGGGCTCAAGTTATCGAGGAATTTGGAGTCTCAGGAGCAGATGGTCCCATGGTTCTGCTTGCAAGCCTTAAGGCTTCAGGTGCGGGTATAAATCTCACAGCCGCCTCCAGAGTGTACTTGTTGGAGCCATGGTGGAACCCAGCAGTTGAGGAACAAGCAATGGATCGTGTGCACCGAATTGGACAGAAAGAGGAGGTGAAGATTGTCAGAATGATTGCTCAAAACAGCATTGAAGAGAGGATTTTACAGTTGCAAGAGAAGAAGAAGCAACTTGCAAGGGAAGCATTTGGAAAGAGGAAAGCAAAGGGTCGTAGTGAAGTAGGGGCGGATGATCTCCGTGTTCTTATGTCATTGTGA 2949 0.4283 MATQKNQHVKQTSSAAAASSVTSCRKKKNEEASFFEDLKDHVDEFIHASMDEHKTCFKKTIQKMFGLSKVVAERNSDTTKEVESSLPLGTTVEDTAHTSRSSLFFIKVQVFFQKTKHSLMEDDEFFDPTDQCSQGSSSETYLLGFVFANIVGIKHYSGTISGREMVGLVREPLNPYDENAIKVLNTRTVQVGHIERSVAAVLSPLIDASLIAVEGIVPKMHSGNKFKIPCQIHIFAAIETFPIVKDVISEGGLTLISESDVSFTLSESMAVKERRAKKEFKSVDEIFKLVDESVSKRCALEALEPPRSVIKSDLFLHQKEGLGWLVHRENSCELPPFWEEKDGTYVNVLTNYHTDRRPEPLRGGILADDMGLGKTLTLLSLIAFDKDPSARNMNGGKHDEMGELDEGFSVSSGKTGKRRRTSKQATGSQKRRKTESTPSGGPVNEMSVVDGILSTGMDIKTTLVVCPPSVFSTWITQLEQHTKSGTLKTYMYYGDRRTKDAEELKMYDLVLTTYTTLAIEESWSNSPVKKVEWWRVILDEAHVIKNVNAQQTQAVMNLIARQRWAVTGTPIQNGSYDLFSLMAFLRFEPFSIKSYWQSLVQRPLAQNNMSGLSRLQVLMATISLRRTKDKALEGLPPKTMETYYVELRGEERELYDRMEGEAKNIVQGYINDGSLMRNYSTVLSIILRLRQICTDMALCPSDLKSLLPSNSIEDVSNNPELLQKLVEVLQDGEDFDCPICISPPTDVVITCCAHIFCQACILKTLQHSKSCCPLCRHPLTESDLFSAPPQSSEADSTGLSSHETSLSSKVSALIKLLVASRDQHPATKSVVFSQFRKMLILLEEPLKAAGFKTLRLDGSMNAKRRAQVIEEFGVSGADGPMVLLASLKASGAGINLTAASRVYLLEPWWNPAVEEQAMDRVHRIGQKEEVKIVRMIAQNSIEERILQLQEKKKQLAREAFGKRKAKGRSEVGADDLRVLMSL 982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1535 982 SMART HIRAN_2 143 238 IPR014905 GO:0003676|GO:0008270|GO:0016818
Dere02g1535 982 Gene3D - 291 397 IPR038718 -
Dere02g1535 982 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
Dere02g1535 982 CDD SF2_C_SNF 802 936 - -
Dere02g1535 982 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 812 977 IPR001650 -
Dere02g1535 982 SMART ring_2 737 775 IPR001841 -
Dere02g1535 982 Gene3D - 445 627 IPR038718 -
Dere02g1535 982 SMART helicmild6 840 925 IPR001650 -
Dere02g1535 982 Gene3D - 134 255 - -
Dere02g1535 982 Pfam HIRAN domain 143 232 IPR014905 GO:0003676|GO:0008270|GO:0016818
Dere02g1535 982 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 294 626 IPR027417 -
Dere02g1535 982 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 627 969 IPR027417 -
Dere02g1535 982 SUPERFAMILY RING/U-box 721 782 - -
Dere02g1535 982 ProSitePatterns Zinc finger RING-type signature. 752 761 IPR017907 -
Dere02g1535 982 Gene3D - 636 981 IPR027417 -
Dere02g1535 982 MobiDBLite consensus disorder prediction 1 22 - -
Dere02g1535 982 MobiDBLite consensus disorder prediction 391 405 - -
Dere02g1535 982 Coils Coil 938 958 - -
Dere02g1535 982 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 141 980 - -
Dere02g1535 982 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 718 803 IPR013083 -
Dere02g1535 982 CDD RING-HC_HLTF 732 784 - -
Dere02g1535 982 ProSiteProfiles Zinc finger RING-type profile. 737 776 IPR001841 -
Dere02g1535 982 Pfam Zinc finger, C3HC4 type (RING finger) 737 775 IPR018957 GO:0046872
Dere02g1535 982 MobiDBLite consensus disorder prediction 389 447 - -
Dere02g1535 982 SMART ultradead3 310 595 IPR014001 -
Dere02g1535 982 Pfam SNF2-related domain 317 696 IPR000330 GO:0005524|GO:0140658
Dere02g1535 982 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 355 588 IPR014001 -
Dere02g1535 982 Pfam Helicase conserved C-terminal domain 809 925 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1535 Dere-ChrDere02 15045522 15052311 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1535 111 982 RAD5 or RAD16-like Gene Family AT5G05130 64.579 0.0 1139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Dere02g1535 SNF2_N 2.2e-75 CL0023