Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1534 ATGTCAGCCTCAGGGTCATGGTCTGCTAAGGATAATAAGGCCTTTGAGAGGGCTCTAGCAATCTATGACAAGGACACCCCTGACCGTTGGTACAATGTTGCCAGGGCTGTTGGCGGAAAAACCCCTGAGGAAGTGAAGAGGCACTATGATCTCCTTGTGGAGGACGTTAAGCATATAGAGTCAGGACAAGTGCCCTTCCCTAACTACAAGAAAACTGGAGGCTGCGGCGAGGAAAAAAGGCTCAGGAACCTGAAGCTCCAGTGA 264 0.5076 MSASGSWSAKDNKAFERALAIYDKDTPDRWYNVARAVGGKTPEEVKRHYDLLVEDVKHIESGQVPFPNYKKTGGCGEEKRLRNLKLQ 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1534 87 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
Dere02g1534 87 SUPERFAMILY Homeodomain-like 6 60 IPR009057 -
Dere02g1534 87 SMART sant 3 55 IPR001005 -
Dere02g1534 87 FunFam Transcription factor SRM1 1 66 - -
Dere02g1534 87 CDD SANT 6 49 IPR001005 -
Dere02g1534 87 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 3 77 IPR044636 GO:0003700
Dere02g1534 87 Pfam Myb-like DNA-binding domain 5 49 IPR001005 -
Dere02g1534 87 Gene3D - 1 66 - -
Dere02g1534 87 ProSiteProfiles SANT domain profile. 2 57 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1534 Dere-ChrDere02 15031581 15032026 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dere02g1534 Myb_DNA-binding 9.6e-06 CL0123