Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1492 ATGCCGCCCAGAATAGCCACCCAAATTGCTCTGGCTGTATCTCTCCTTCTCTCTCTATCTCTTTTCTTTTCTCTCTCAAAAAATCTATCAATACACTTACACACACAAACCTACAGCCACACCCCTCCATTCACTCAGAGAATCCAATCAAAACAACCACATTTCCTTCTCTTAGCTCAATTTCTCTGCCTTGATCATCAACCCTTAAGTAGCTTCACCATGTCCCTGGAGGATTCTCTAAGATCTCTGTCGCTGGACTACCTCAACCTCCTCATCAACGGCCAAGCCTTTAGTGACGTCACTTTCAGCGTGGAGGGTCGTCTCGTCCACGCTCACCGATGCATCCTGGCAGCTCGGAGCCTCTACTTCAGGAAATTCTTCTGCGCCCCGGACCTACCATCGGGGCTGGACCCGGCGGGCTCTCGGGTCAACTCCGGAACCGCCAGCCCAAGGTCGGGGGTCATTCCGGTGAACTCTGTGGGCTACGAGGTCTTCTTGCTGCTCCTCCAGTTCTTGTACAGCGGCCAAGTCTCTATTGTGCCTCAGAAGCATGAGCCCAGGCCTAATTGTGGCGAGCGAGGCTGTTGGCACACGCATTGCACCTCGGCCGTTGATCTTGCCCTCGACACGCTCGCTGCCGCTAGATCCTTTGGCGTTGAACAGCTCGCATTGCTTACTCAGAAACAATTAGCGAGCATGGTAGAGAAGGCCTCCATTGAAGATGTAATGAAAGTACTTGTAGCATCAAGAAAGCAAGACATGCACCAGCTGTGGGCCACTTGCTCCCACCTTGTTGCAAAGTCAGGTCTCCCTCCTGAAGTCCTCGCCAAACACCTCCCCATTGACGTCGTCGCTAAGATCGGAGAGATTCGTCTCAAATCCTCCTTCGCTCGCCGCTCTCTATTGCCCTACCACCACCCCGAACTTCGCATGGCCGACCTCGAGGACCAGAAAATTCGGCGAATGAAAAGAGCACTCGACTCCTCCGATGTGGAGCTCGTGAAGCTCATGGTAATGGGAGAAGGCCTAAATCTAGACGAAGCATTGGCCTTGCACTACGCCGTAGAGAATTGCAGCCGAGAAGTAGTGAAAGCGTTGTTGGAGCTTGGGGCGGCTGACGTCAATTACCCGGCGGGGCCTGCGGGAAAGACCCCGCTTCACATTGCATCGGAGATGGTGTCGCCGGACATGGTAGCGGTCCTCCTGGACCACCATGCTGACCCGAATGTCCGAACCGTGGACGGGGTGACCCCACTTGACATACTCAGAACCCTAACTTCAGATTTCCTGTTCAAAGGGGCCGTCCCTGGGCTAACCCACATCGAACCCAACAAGCTGAGACTGTGCTTGGAGCTGGTTCAATCAGCGGCTCTTGTGATCTCTCGCGAAGAAGGAAATGCCAATCCTCCTACTTCAACGGCCATATATCCCCCATTGAGCGAAGACAATAGTAGTGGGAGCAGCAGCAACCTGAACCTGGATTCGAGGTTGGTTTATCTGAATCTGGGTGCGGCGGCTTCAGGTCAAATGGTTTCGAGATTGGACGGAGATGACGACAGCAACAGGGATGCCATGAATCGTCATGGTTCGCAAGCAGGTGGATGTGACCCAACAATGTACCACCACCACTCTCGCGACTTCTAG 1644 0.5365 MPPRIATQIALAVSLLLSLSLFFSLSKNLSIHLHTQTYSHTPPFTQRIQSKQPHFLLLAQFLCLDHQPLSSFTMSLEDSLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLYFRKFFCAPDLPSGLDPAGSRVNSGTASPRSGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARSFGVEQLALLTQKQLASMVEKASIEDVMKVLVASRKQDMHQLWATCSHLVAKSGLPPEVLAKHLPIDVVAKIGEIRLKSSFARRSLLPYHHPELRMADLEDQKIRRMKRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIASEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVISREEGNANPPTSTAIYPPLSEDNSSGSSSNLNLDSRLVYLNLGAAASGQMVSRLDGDDDSNRDAMNRHGSQAGGCDPTMYHHHSRDF 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1492 547 MobiDBLite consensus disorder prediction 464 488 - -
Dere02g1492 547 Pfam Domain of unknown function (DUF3420) 269 322 IPR024228 -
Dere02g1492 547 FunFam regulatory protein NPR5 isoform X2 312 429 - -
Dere02g1492 547 ProSiteProfiles Ankyrin repeat profile. 381 413 IPR002110 GO:0005515
Dere02g1492 547 ProSiteProfiles Ankyrin repeat region circular profile. 381 411 - -
Dere02g1492 547 SMART ANK_2a 346 376 IPR002110 GO:0005515
Dere02g1492 547 SMART ANK_2a 381 410 IPR002110 GO:0005515
Dere02g1492 547 FunFam regulatory protein NPR5 isoform X1 77 267 - -
Dere02g1492 547 MobiDBLite consensus disorder prediction 511 547 - -
Dere02g1492 547 ProSiteProfiles BTB domain profile. 98 181 IPR000210 GO:0005515
Dere02g1492 547 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 74 543 IPR044284 GO:0099402
Dere02g1492 547 Pfam BTB/POZ domain 89 182 IPR000210 GO:0005515
Dere02g1492 547 SMART BTB_4 98 234 IPR000210 GO:0005515
Dere02g1492 547 Gene3D - 313 429 IPR036770 -
Dere02g1492 547 Pfam Ankyrin repeats (3 copies) 329 411 IPR002110 GO:0005515
Dere02g1492 547 Gene3D Potassium Channel Kv1.1; Chain A 72 267 IPR011333 -
Dere02g1492 547 SUPERFAMILY Ankyrin repeat 340 424 IPR036770 -
Dere02g1492 547 CDD BTB_POZ_NPR_plant 81 234 - -
Dere02g1492 547 MobiDBLite consensus disorder prediction 465 488 - -
Dere02g1492 547 SUPERFAMILY POZ domain 82 263 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1492 Dere-ChrDere02 14587878 14590982 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Dere02g1492 BTB 1.7e-14 CL0033
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2352 01 37847923 37850234 Dere02g1492 02 14587878 14590982 CCT
Dere02g1492 02 14587878 14590982 Dere02g1492 02 14587878 14590982 ECH