Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1460 ATGGCAACTACAGACTTCACACTTTCAGATTCGATCCGATCCAATCAAATCCCAGGGGTACCAAACGATAGCTTCACTCGCTGTCGCAGTGTGAGAGGAACCGAAGTGGCAGTGACGCAGAAGGAAGTGTCGCGGACGGCTGCGGAGGGATTTCGGCCACCCATTCCTCCATCTCCAAGGGCTGTTCCCTTCTGGTTAATCAGCCATCTTATGGTGAGTGATAGCTTATGCATTAGTGTCTTGTTTGTATGTAAAACTATATTGCAAATTAATTCGATTTGGATGTTTAAAGAATTATTGGAGATGGGAAGCATTATGGAAGTTGAGGACGACAAGACTACATCTACTACTTCTGCAGAAACCTCTATCCCAGCTTCTGATGGTCAAAGCATGGTTTCTCCTGTTCATGTTACACTGCCCCCACCAATACAACCTATAATTCCAGCAGTGGTTCCACCTTCTATTGTGCCTCCTATAGCTCCAATTCCTACAATTCCTCCTCCCACTGCTCTCCGCCCATTAGCACCTCCTCCTGTTCGGCCACCCCCAATTAGGCCACTTGTGTCTCAAAATGGTGAGGTTAGATCAACTGACTCTGATTCAGACCATGATGACTCAGGCCCTGGGATTAACAAGGGTACAGGGGAGTATGAGATATCAGAAGAGAGTAGACTGGTAAGAGAGAGGCAAGAAAAAGCAATGCAGGAACTAATGATGAAAAGGCGTGCAGCTGCTCTAGCTGTTCCCACAAATGACATGGCTGTGCGAGCTCGTCTTCGCCGTCTTGGCGAACCCATCACTCTTTTCGGTGAAAGGGAGATGGAGAGAAGAGATAGGTTGCGAATGATTATGGCGAAGTTAGATGCTGAAGGTCAGCTGGAAAAGCTGATGAAAGCTCATGAAGATGAAGAGGCTGCAGCTTCTGCTGCAAAAGACGAAACTGAGGAAGAACTACAGTATCCTTTTTACACTGAAGGGTCAAAGGCCCTCCTGGATGCCAGAATTGATATTGCTAAGTATTCTTTAGTAAGAGCAGCAACACGTCTTCAACGTGCCCGGAGAAGAAGAGACAATCCAGATGAAGATATAGATGCAGAAATAGACTGGGCATTAAAGCAGGCAGAGAACTTGGTACTTGATTGCAGTGAGATTGGGGATGATCGGCCACTTTCTGGTTGCTCCTTCTCACCTGATGGAAAATGGCTTGCTACCTGTTCTTTAACTGGAGCTGCCAAGTTGTGGAGCATGCCTGAAGTTAAAAGATTTTCTACCTTAAAGGGGCACACTGAGCGTGCTACTGATGTTGCTTACTCTCCTGTGCATAATCATATAGCAACTGCTTCTGCTGATCGTACTGCAAGGTATTGGAATGATCAAGGATCTCTTTTAAAGACATTTGAGGGTCATCTTGACCGTCTTGCCCGTATTTCCTTCCATCCATCAGGGAAGTACCTGGGCACTGCTAGCTTTGACAAGACATGGAGATTGTGGGACATAGAAACAGGAGAGGAGTTGCTTCTCCAAGAAGGTCACAGCAGGAGTGTGTATGGTTTGGCTTTCCACCATGATGGATCATTAGCTGCATCTTGTGGACTGGATTCACTAGCTCGTGTTTGGGACCTTCGTACTGGGAGAAGTATTCTAGCACTTGAAGGTCATGTCAAGCCGGTTCTTGGTATAAGTTTTTCACCTAATGGATATCATTTAGCCACGGGTGGTAAAGACAACACTTGTCGCATTTGGGATTTGAGGAAGAAGAAATCCTTGTACGTCATTCCAGCTCACTCTAATTTAATATCACAAGTCAAATTTGAGCCACAAGAGGGTTACTTTTTGGTAACTGCCTCATATGATATGACAGCTAAGGTCTGGTCAGCACGTGATTTTAAACCTGTGAAGACATTATCTGGGCATGAAGCTAAAGTTACTTCTCTGGATGTTCTCGGAGATGGACGGTATATTGCTACTGTCTCCCATGATCGGACCATAAAGCTGTGGTCCAGTAACTTGGTTAGTGAACAGACTATGGATGTTGACTGA 2040 0.4559 MATTDFTLSDSIRSNQIPGVPNDSFTRCRSVRGTEVAVTQKEVSRTAAEGFRPPIPPSPRAVPFWLISHLMVSDSLCISVLFVCKTILQINSIWMFKELLEMGSIMEVEDDKTTSTTSAETSIPASDGQSMVSPVHVTLPPPIQPIIPAVVPPSIVPPIAPIPTIPPPTALRPLAPPPVRPPPIRPLVSQNGEVRSTDSDSDHDDSGPGINKGTGEYEISEESRLVRERQEKAMQELMMKRRAAALAVPTNDMAVRARLRRLGEPITLFGEREMERRDRLRMIMAKLDAEGQLEKLMKAHEDEEAAASAAKDETEEELQYPFYTEGSKALLDARIDIAKYSLVRAATRLQRARRRRDNPDEDIDAEIDWALKQAENLVLDCSEIGDDRPLSGCSFSPDGKWLATCSLTGAAKLWSMPEVKRFSTLKGHTERATDVAYSPVHNHIATASADRTARYWNDQGSLLKTFEGHLDRLARISFHPSGKYLGTASFDKTWRLWDIETGEELLLQEGHSRSVYGLAFHHDGSLAASCGLDSLARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGKDNTCRIWDLRKKKSLYVIPAHSNLISQVKFEPQEGYFLVTASYDMTAKVWSARDFKPVKTLSGHEAKVTSLDVLGDGRYIATVSHDRTIKLWSSNLVSEQTMDVD 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1460 679 Gene3D - 549 677 IPR015943 GO:0005515
Dere02g1460 679 FunFam U4/U6 small nuclear ribonucleoprotein Prp4 593 669 - -
Dere02g1460 679 ProSitePatterns Trp-Asp (WD) repeats signature. 485 499 IPR019775 -
Dere02g1460 679 MobiDBLite consensus disorder prediction 171 225 - -
Dere02g1460 679 CDD WD40 389 667 - -
Dere02g1460 679 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 635 667 - -
Dere02g1460 679 PANTHER WD40 REPEAT PROTEIN 204 667 - -
Dere02g1460 679 ProSiteProfiles Trp-Asp (WD) repeats profile. 550 591 IPR001680 GO:0005515
Dere02g1460 679 ProSiteProfiles Trp-Asp (WD) repeats profile. 635 667 IPR001680 GO:0005515
Dere02g1460 679 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 550 584 - -
Dere02g1460 679 MobiDBLite consensus disorder prediction 111 133 - -
Dere02g1460 679 SUPERFAMILY WD40 repeat-like 382 666 IPR036322 GO:0005515
Dere02g1460 679 ProSiteProfiles Trp-Asp (WD) repeats profile. 508 549 IPR001680 GO:0005515
Dere02g1460 679 ProSitePatterns Trp-Asp (WD) repeats signature. 569 583 IPR019775 -
Dere02g1460 679 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 425 457 - -
Dere02g1460 679 MobiDBLite consensus disorder prediction 171 185 - -
Dere02g1460 679 PRINTS G protein beta WD-40 repeat signature 654 668 IPR020472 -
Dere02g1460 679 PRINTS G protein beta WD-40 repeat signature 485 499 IPR020472 -
Dere02g1460 679 PRINTS G protein beta WD-40 repeat signature 569 583 IPR020472 -
Dere02g1460 679 SMART WD40_4 628 667 IPR001680 GO:0005515
Dere02g1460 679 SMART WD40_4 543 582 IPR001680 GO:0005515
Dere02g1460 679 SMART WD40_4 501 540 IPR001680 GO:0005515
Dere02g1460 679 SMART WD40_4 585 625 IPR001680 GO:0005515
Dere02g1460 679 SMART WD40_4 459 498 IPR001680 GO:0005515
Dere02g1460 679 SMART WD40_4 418 457 IPR001680 GO:0005515
Dere02g1460 679 SMART WD40_4 374 415 IPR001680 GO:0005515
Dere02g1460 679 SMART pr04_2 250 303 IPR014906 -
Dere02g1460 679 SUPERFAMILY PRP4-like 233 288 IPR036285 -
Dere02g1460 679 Gene3D - 365 548 IPR015943 GO:0005515
Dere02g1460 679 ProSiteProfiles Trp-Asp (WD) repeats profile. 425 457 IPR001680 GO:0005515
Dere02g1460 679 Gene3D - 226 295 IPR036285 -
Dere02g1460 679 ProSiteProfiles Trp-Asp (WD) repeats profile. 466 507 IPR001680 GO:0005515
Dere02g1460 679 Pfam WD domain, G-beta repeat 630 667 IPR001680 GO:0005515
Dere02g1460 679 Pfam WD domain, G-beta repeat 548 582 IPR001680 GO:0005515
Dere02g1460 679 Pfam WD domain, G-beta repeat 509 540 IPR001680 GO:0005515
Dere02g1460 679 Pfam WD domain, G-beta repeat 423 457 IPR001680 GO:0005515
Dere02g1460 679 Pfam WD domain, G-beta repeat 460 498 IPR001680 GO:0005515
Dere02g1460 679 Pfam WD domain, G-beta repeat 391 414 IPR001680 GO:0005515
Dere02g1460 679 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 592 625 - -
Dere02g1460 679 ProSiteProfiles Trp-Asp (WD) repeats profile. 592 634 IPR001680 GO:0005515
Dere02g1460 679 ProSitePatterns Trp-Asp (WD) repeats signature. 527 541 IPR019775 -
Dere02g1460 679 Pfam pre-mRNA processing factor 4 (PRP4) like 255 281 IPR014906 -
Dere02g1460 679 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 508 545 - -
Dere02g1460 679 Coils Coil 286 317 - -
Dere02g1460 679 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 466 503 - -
Dere02g1460 679 FunFam U4/U6 small nuclear ribonucleoprotein PRP4-like protein 365 549 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1460 470 666 U-box Gene Family AT2G33340 23.529 2.19e-11 64.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere02g1460 02 14157169 14161860 Dere02g1460 02 14157169 14161860 ECH