Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1425 ATGGAAATTCTGTGCTTTTTGATTTTTGCGCTTGTTTGGTATGTGTCAAAATCTGAGCTTGTGGGTGTGGGTGCTGAGCTACAGGATCAAACTATACTGCTTGCCATTAACCAAGAGCTTAAAGTACCTAGATGGGATGCCAACAACTCGATTCACTGCTCTTGGCAAGGCATTGGCTGCAATAATCACTCAATGGTGGTGAAGCTCGATTTGTCTCATGCAAACCTTAGAGGTAATATCACTTTAGTTTCCCAGCTCAAAGCTCTTAGGCGGCTTGACCTTTCAAATAATAATTTTCATGGGTTCATTCCTCCAGCTTTTGGAAATTTATCTGATCTAGAAGTTCTAGATTTGTCTTCAAATAAGTTCGAAGGTTCCATTCCACCAGAATTAGGTGGCCTCAGAAATCTTAAATCATTGAACGTTTCCAACAATTTGCTTGTGGGTAAAATACCAAATGAACTTCAGGGCCTAGAGAAATTGCAGGAGTTTCAAATCTCTAGTAATCAATTGAGCGGTTCTTTGCCTTCTTGGGTGGGAAATTTAACCAATCTAAGAGTCCTTGCAGCCTATGAGAATCGTCTCGATGGTAGGATTCCAGAGAATCTTGGCTTGGCTTCCGAGCTTCGAATTCTTAACCTGCATTCAAACCAACTTGAAGGCCCTATACCAGCAGATATTTTTGCTCCAGGAAAGCTGGAAGTTCTGGTTCTGACCCAGAACAATTTGAGTGGTGATCTTCCTCAAGAACTTGGAAAATGTCGAGGCCTTTCCAGTATCCGAATTGGGAACAATCATCTAATAGGTTCTATTCCTAAGACCATTGGAAATATCAGCAGCCTTACCTACTTTGAAGCAGACAATAACAATCTTTCTGGTGAGGTAGTGTCTGAGTTTTCTCAGTGTTCTAATCTCACCCTCCTGAACTTAGCTTCAAATGGATTCAGCGGAACAATTCCACCCAAATTTGGACAGCTTATGAACTTGCAGGAATTGATACTTTCTGGAAATAACCTATTTGGCGATATTCCAGAATCAATTTTGAGGTGCAGGAATCTTAACAAGCTTGATATAAGCAATAACAGGTTCAATGGAACAATACCAACTGAAATCTGCAATTTGTCTAGGCTGCAGTTCTTGCTATTGGGTCAGAATTCCATAAGAGGAGAAATCCCTCATGAAATTGGAAACTGTGCAAAACTTCTTGAGTTGCAAATGGGCAGTAACTATTTGACAGGAATTATCCCTTCTGAGATTGGTCACATTAGGAACTTGCAGATAGCTTTAAATTTGAGCTTCAATCATCTTCATGGATCACTGCCTCCTGAGTTAGGAAGACTGGACAAACTTGTCTCTCTGGATGTTTCAAACAATCGGCTCTCAGGCAGTATCCCTGCTGAGCTGAAGGGTATGTTGAGCTTGATAGAGGTTAACTTTTCAAATAATTTGTTCGGTGGCCCAGTGCCAACATTTGTCCCGTTCCAAAAGAGTCCTAATTCAAGTTTTATGGGCAATAAAGGGCTTTGTGGAGAGCCATTAAACTCTTCATGTGGAGATCTTTATGATGACCATAGTAACTACCATCACAGAGTTTCTTACAGAATCATACTAGCTGTAATTGGTTCTGGTCTGGCAGTTTTTATGTCAGTCACTGTGGTGGTCTTGCTGTTTATGATTAAAGAGAGGCAAGAAAAAGCAGCCAAAGATGCTGGGATTGCTGATGATGAAACTAATAGCAAACCAACTATAATAGCAGGTAGTGTCTTTGTCGAGAATCTTAGACAAGCGGTAGACCTTGATGCTGTTGTTAAAGCAACCCTGAAGGATTCCAATAAGCTCAGTAGCGGTACTTTCAGTACAGTTTACAAGGCAGTCATGCCTTCTGGAATGGTCTTATCCGTAAGGAGACTTAAGTCCATGGACAAGACAATAATCCACCACCAGAACAAGATGATTAGAGAACTTGAGAGGCTGAGCAAACTCTGTCATGACAATCTGGTTCGACCTATTGGATATGTTATTTATGAAGATGTTGCTCTTCTCTTGCATCATTTTTTGCCCAATGGAACACTGGCACAGCTTCTTCATGAGTCTACCAAGCAACCTGAATATCAACCTGACTGGCCTACTAGACTATCCATTGCCATTGGTGTGGCAGAAGGTCTGGCTTTTCTGCATCATGTGGCAATTATCCACCTTGACATTTCTTCTGGCAATGTTCTTTTGGATGCAAATTTCAAGCCTTTGCTTGGGGAGATCGAGATTTCAAAACTTCTTGATCCAACCAGAGGCACTGCAAGTATTAGTGCCGTTGCTGGTTCATTTGGTTACATACCACCAGAATATGCATATACAATGCAAGTTACAGCACCCGGAAATGTCTACAGTTATGGTGTAGTCCTGCTTGAGATCCTTACAACTCGACCACCAGTTGATGAGGATTTCGATGAAGGCGTAGATTTGGTGAAGTGGGTTCATAGCGCTCCATTGAGAGGGGAAACTCCAGAACAGATACTGGATGCAAGGCTTAGCACAGTTTCCTTTGGTTGGAGGAAAGAAATGCTTGCTGCTTTGAAGGTTGCATTGCTCTGCACTGACGGTACACCAGCCAAACGACCAAAGATGAAGAAGGTAGTGGAAATGCTCCAAGAAATAAAGCAAAACTGA 2667 0.4173 MEILCFLIFALVWYVSKSELVGVGAELQDQTILLAINQELKVPRWDANNSIHCSWQGIGCNNHSMVVKLDLSHANLRGNITLVSQLKALRRLDLSNNNFHGFIPPAFGNLSDLEVLDLSSNKFEGSIPPELGGLRNLKSLNVSNNLLVGKIPNELQGLEKLQEFQISSNQLSGSLPSWVGNLTNLRVLAAYENRLDGRIPENLGLASELRILNLHSNQLEGPIPADIFAPGKLEVLVLTQNNLSGDLPQELGKCRGLSSIRIGNNHLIGSIPKTIGNISSLTYFEADNNNLSGEVVSEFSQCSNLTLLNLASNGFSGTIPPKFGQLMNLQELILSGNNLFGDIPESILRCRNLNKLDISNNRFNGTIPTEICNLSRLQFLLLGQNSIRGEIPHEIGNCAKLLELQMGSNYLTGIIPSEIGHIRNLQIALNLSFNHLHGSLPPELGRLDKLVSLDVSNNRLSGSIPAELKGMLSLIEVNFSNNLFGGPVPTFVPFQKSPNSSFMGNKGLCGEPLNSSCGDLYDDHSNYHHRVSYRIILAVIGSGLAVFMSVTVVVLLFMIKERQEKAAKDAGIADDETNSKPTIIAGSVFVENLRQAVDLDAVVKATLKDSNKLSSGTFSTVYKAVMPSGMVLSVRRLKSMDKTIIHHQNKMIRELERLSKLCHDNLVRPIGYVIYEDVALLLHHFLPNGTLAQLLHESTKQPEYQPDWPTRLSIAIGVAEGLAFLHHVAIIHLDISSGNVLLDANFKPLLGEIEISKLLDPTRGTASISAVAGSFGYIPPEYAYTMQVTAPGNVYSYGVVLLEILTTRPPVDEDFDEGVDLVKWVHSAPLRGETPEQILDARLSTVSFGWRKEMLAALKVALLCTDGTPAKRPKMKKVVEMLQEIKQN 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1425 888 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 130 223 - -
Dere02g1425 888 SUPERFAMILY Protein kinase-like (PK-like) 607 885 IPR011009 -
Dere02g1425 888 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 686 888 - -
Dere02g1425 888 SUPERFAMILY L domain-like 42 296 - -
Dere02g1425 888 ProSitePatterns Tyrosine protein kinases specific active-site signature. 730 742 IPR008266 GO:0004672|GO:0006468
Dere02g1425 888 Gene3D Transferase(Phosphotransferase) domain 1 686 888 - -
Dere02g1425 888 SMART LRR_typ_2 447 470 IPR003591 -
Dere02g1425 888 SMART LRR_typ_2 374 398 IPR003591 -
Dere02g1425 888 SMART LRR_typ_2 134 157 IPR003591 -
Dere02g1425 888 SMART LRR_typ_2 86 109 IPR003591 -
Dere02g1425 888 SMART LRR_typ_2 158 182 IPR003591 -
Dere02g1425 888 SMART LRR_typ_2 326 350 IPR003591 -
Dere02g1425 888 SMART LRR_typ_2 110 133 IPR003591 -
Dere02g1425 888 SMART LRR_typ_2 207 230 IPR003591 -
Dere02g1425 888 Pfam Protein tyrosine and serine/threonine kinase 610 881 IPR001245 GO:0004672|GO:0006468
Dere02g1425 888 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 577 685 - -
Dere02g1425 888 SUPERFAMILY L domain-like 193 515 - -
Dere02g1425 888 Pfam Leucine rich repeat 328 387 IPR001611 GO:0005515
Dere02g1425 888 Pfam Leucine rich repeat 88 147 IPR001611 GO:0005515
Dere02g1425 888 Gene3D Ribonuclease Inhibitor 275 525 IPR032675 -
Dere02g1425 888 ProSiteProfiles Protein kinase domain profile. 607 888 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere02g1425 888 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 227 520 - -
Dere02g1425 888 Gene3D Phosphorylase Kinase; domain 1 572 685 - -
Dere02g1425 888 CDD STKc_IRAK 613 885 - -
Dere02g1425 888 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 26 884 - -
Dere02g1425 888 FunFam Leucine-rich repeat receptor-like kinase 28 129 - -
Dere02g1425 888 Gene3D Ribonuclease Inhibitor 26 169 IPR032675 -
Dere02g1425 888 Gene3D Ribonuclease Inhibitor 170 274 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1425 Dere-ChrDere02 13755294 13758246 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1425 1 887 Receptor kinase-like Gene Family AT2G41820 73.371 0.0 1313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Dere02g1425 PK_Tyr_Ser-Thr 4e-26 CL0016