Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1423 ATGGGAACTCCTGAATTCCCTGATCTAGAAAAGCATTGTGCCCTTGATGATTGCAACCAGATTGATTTCTTGCCTTTCACTTGCGATCGCTGTGAGAAGAATTCTTCTTTTTCTTTTGTTAAGAAGAATGTAGCCAAAACACTTCTGAGTTATGATAAGCATTCTTCTCAACTTAATGCGGGTTATATTTCTCAGTTGTTAGTAGTGATTATGTACGATAACTTTCCGGAAATTGGTCATACATGCTGTGTGTATGTTTCTCGTCGTAGTTCACCGTGTGGATTGCTGTTCTTCTTGCCTTTAATTTTTAAAATTTTGGGTTTGAACAAAGTTTATATGCCAAAATGCTCGCAGTTATACTGTTTGGAGCACCGCAGTTATATTAATCATAACTCTCCAAAAGCAGACCGACAAGGTGTCACTGTTGTCATATGTCCACTTTGTACCAAAGGAGTTCACCTAATTCCTGATCAAGATCCGAACATAACTTGGGACAATCATGTTAATACTGAGTGCGATCCGTCAAATTATGAGACAGCCACGAACAAGAAAAAGTGCCCTGCCCCTGGATGTACAGAGATCTTAGTATTCTCAAACACGATAAAGTGCAGGGACTGCTTGGTAGACCACTGTTTGAAGCACCGATTTGGATCTGATCACAAATGTCCTGGGCCCAAAAAGCTGGAAACGAGTTTTTCATTTATGAGTTTTCTGAGTAAGAGCGCAAAAGAGGAGTCAATGCCCAGTATGGCTTCAACCACAACCACATCGTCTAAATGGACAGCAAGCTTCCTTAATGTGGCTTCTAACATTCGAGCCTCAGCTGAAGCAGGCATGTCCAAATTGAGTGATGAAATAAACCAAGCTTGGCAGACAGCAAGGGATGGGGTGGGGCAAACCAGTAGTAGTGGTAACAGAAATGGTATAGTGGAGCATTGCCCTCAATGTGGTGCCAAGTTTGTTGATGACTGCCCTAAGGGTAGCAGAGGATTTCGAGATCCAGTGGTGCTTGTGCAGCATGTTGAGAGGGATCATGGTGTAGCAGAATGA 1050 0.4238 MGTPEFPDLEKHCALDDCNQIDFLPFTCDRCEKNSSFSFVKKNVAKTLLSYDKHSSQLNAGYISQLLVVIMYDNFPEIGHTCCVYVSRRSSPCGLLFFLPLIFKILGLNKVYMPKCSQLYCLEHRSYINHNSPKADRQGVTVVICPLCTKGVHLIPDQDPNITWDNHVNTECDPSNYETATNKKKCPAPGCTEILVFSNTIKCRDCLVDHCLKHRFGSDHKCPGPKKLETSFSFMSFLSKSAKEESMPSMASTTTTSSKWTASFLNVASNIRASAEAGMSKLSDEINQAWQTARDGVGQTSSSGNRNGIVEHCPQCGAKFVDDCPKGSRGFRDPVVLVQHVERDHGVAE 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1423 349 ProSiteProfiles Zinc finger AN1-type profile. 180 230 IPR000058 GO:0008270
Dere02g1423 349 Gene3D - 2 41 IPR035896 -
Dere02g1423 349 Gene3D - 166 236 IPR035896 -
Dere02g1423 349 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 5 33 - -
Dere02g1423 349 Pfam AN1-like Zinc finger 186 226 IPR000058 GO:0008270
Dere02g1423 349 SUPERFAMILY AN1-like Zinc finger 6 33 IPR035896 -
Dere02g1423 349 SUPERFAMILY AN1-like Zinc finger 178 228 IPR035896 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1423 Dere-ChrDere02 13719665 13721703 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1423 75 345 C2H2 Transcription Factor Family AT3G57480 50.923 2.48e-85 256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2441 01 38952080 38960288 Dere02g1423 02 13719665 13721703 CCT
Dere02g1423 02 13719665 13721703 Dere02g1423 02 13719665 13721703 ECH