Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1418 ATGGGTAATTGTTGCGTGACTCCATTTGGCCCTCGTGAGAAGAAAAAGAAGGGGAATAAGAAACAGAACCTGTTTGCGATTGATTTCGGCCACAATTGTGGAAATGGTGGAAGAAAGATCGACGTTTTGAAGGAGCCAACAGGCCGCGAAATTGAGAGCAGATACGAGCTGGGTCGCGAGCTTGGAAGAGGGGAATTCGGAGTTACCTACTTATGCACCGATAAAGAGACCGGTGAGAATTTCGCTTGCAAATCGATATCGAAGAAAAAGCTGAGAACAGCCATTGATATCGAGGACGTTAGGAGAGAAGTTGAGATCATGAAGCATTTGCCAGAGCACCCAAATATTGTGAACTTAAAGGACACTTACGAGGACGACAATGCGGTCCATCTTGTGATGGAATTGTGCGAGGGAGGAGAATTGTTCGATCGGATAGTTGCGCGTGGGCACTACACAGAACGGGCTGCCGCAGTTGTCACACGGACAATCGTCGAAGTTGTGCAGGCTTGCCACAAACATGGTGTGATGCATCGGGATCTCAAACCTGAGAACTTTTTGTTTGCGAACAAGAAGGAAACGTCACCTCTGAAGGCTATTGACTTTGGATTGTCAGTGTTTTTTAAACCCGGTGAAAAATTTAATGAGATAGTTGGAAGTCCATATTACATGGCTCCTGAGGTCTTAAAACGAAATTATGGACCAGAAATAGATATCTGGAGCACTGGAGTAATTCTGTACATCTTACTTTGTGGTGTTCCACCATTTTGGGCCGAAACGGAACAGGGAGTTGCACAAGCAATCATACGATCTGTTGTTGATTTTAAAAGGGATCCATGGCCAAAGGTTTCTGATAATGCAAAAGATCTTGTGAAGAAGATGCTTAATCCAAACCCGCAGCAGCGTCTTACTGCTCAGGAAGTGTTAGATCATCCATGGTTACAGAATGCACAAAATGCTCCTAATGTTTCATTGGGAGAAACAGTAAGAGCAAGGCTCAAGCAATTCTCTGTCATGAACAAGCTTAAGAAAAGAGCTCTGAGGGTGATTGCGGAACATTTGTCGGTAGAAGAAGTTGCTGGATTAAAAGAGCGATTCCAGCTGATGGATACGGCCAACAGAGGCAAGATTAACAGTGATGAGCTACGAGTAGGGTTGCATAAATTAGGCCATTCTATTCCAGATGAAGATCTCCAAATTCTGATGGAAGCTGGTGACGTAGACAGGGATGGATACCTAGATTATGGAGAATTTGTAGCCCTTTCTGTTCATCTGAAAAAGATGGGCAATGATGAGCACCTTCACAAAGCTTTCCAATTTTTTGACAAGAACAAAAGTGGGTATATAGAAATTGAGGAGCTACGTGATGCCTTAGCTGATGATGTTGATAAAGACAACGAAGAAGTCATTAAAGCAATTATGCATGATGTGGACTCAGATAAGGATGGAAAAATAAGCTATGAGGAGTTTGATGCGATGATGAAGGCCGGCACAGATTGGAGAAAAGCATCAAGGCAGTATTCGCGAGAGAGATTTAATAGTCTCAGTCTGAAATTGTTGAGAGATGGGTCGTTGAGATAA 1578 0.4335 MGNCCVTPFGPREKKKKGNKKQNLFAIDFGHNCGNGGRKIDVLKEPTGREIESRYELGRELGRGEFGVTYLCTDKETGENFACKSISKKKLRTAIDIEDVRREVEIMKHLPEHPNIVNLKDTYEDDNAVHLVMELCEGGELFDRIVARGHYTERAAAVVTRTIVEVVQACHKHGVMHRDLKPENFLFANKKETSPLKAIDFGLSVFFKPGEKFNEIVGSPYYMAPEVLKRNYGPEIDIWSTGVILYILLCGVPPFWAETEQGVAQAIIRSVVDFKRDPWPKVSDNAKDLVKKMLNPNPQQRLTAQEVLDHPWLQNAQNAPNVSLGETVRARLKQFSVMNKLKKRALRVIAEHLSVEEVAGLKERFQLMDTANRGKINSDELRVGLHKLGHSIPDEDLQILMEAGDVDRDGYLDYGEFVALSVHLKKMGNDEHLHKAFQFFDKNKSGYIEIEELRDALADDVDKDNEEVIKAIMHDVDSDKDGKISYEEFDAMMKAGTDWRKASRQYSRERFNSLSLKLLRDGSLR 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1418 525 FunFam Calcium-dependent protein kinase 7 322 497 - -
Dere02g1418 525 ProSitePatterns Serine/Threonine protein kinases active-site signature. 175 187 IPR008271 GO:0004672|GO:0006468
Dere02g1418 525 FunFam Calcium-dependent protein kinase 1 57 140 - -
Dere02g1418 525 PANTHER SERINE/THREONINE-PROTEIN KINASE 49 489 - -
Dere02g1418 525 Pfam Protein kinase domain 55 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere02g1418 525 CDD EFh 432 494 IPR002048 GO:0005509
Dere02g1418 525 Gene3D - 322 496 - -
Dere02g1418 525 ProSiteProfiles EF-hand calcium-binding domain profile. 356 391 IPR002048 GO:0005509
Dere02g1418 525 ProSiteProfiles EF-hand calcium-binding domain profile. 392 427 IPR002048 GO:0005509
Dere02g1418 525 FunFam calcium-dependent protein kinase 13 141 321 - -
Dere02g1418 525 ProSitePatterns EF-hand calcium-binding domain. 441 453 IPR018247 -
Dere02g1418 525 SMART serkin_6 55 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere02g1418 525 ProSitePatterns EF-hand calcium-binding domain. 405 417 IPR018247 -
Dere02g1418 525 ProSitePatterns Protein kinases ATP-binding region signature. 61 84 IPR017441 GO:0005524
Dere02g1418 525 ProSitePatterns EF-hand calcium-binding domain. 477 489 IPR018247 -
Dere02g1418 525 ProSiteProfiles Protein kinase domain profile. 55 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere02g1418 525 ProSiteProfiles EF-hand calcium-binding domain profile. 464 499 IPR002048 GO:0005509
Dere02g1418 525 SUPERFAMILY EF-hand 337 506 IPR011992 -
Dere02g1418 525 ProSiteProfiles EF-hand calcium-binding domain profile. 428 463 IPR002048 GO:0005509
Dere02g1418 525 SMART efh_1 468 496 IPR002048 GO:0005509
Dere02g1418 525 SMART efh_1 396 424 IPR002048 GO:0005509
Dere02g1418 525 SMART efh_1 360 388 IPR002048 GO:0005509
Dere02g1418 525 SMART efh_1 432 460 IPR002048 GO:0005509
Dere02g1418 525 Gene3D Transferase(Phosphotransferase) domain 1 141 321 - -
Dere02g1418 525 Pfam EF-hand domain pair 431 494 IPR002048 GO:0005509
Dere02g1418 525 Pfam EF-hand domain pair 361 419 IPR002048 GO:0005509
Dere02g1418 525 Gene3D Phosphorylase Kinase; domain 1 57 140 - -
Dere02g1418 525 CDD STKc_CAMK 54 312 - -
Dere02g1418 525 SUPERFAMILY Protein kinase-like (PK-like) 53 322 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1418 Dere-ChrDere02 13662059 13666231 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1418 1 525 EF-hand Containing Proteins AT5G19450 77.316 0.0 861
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Dere02g1418 Pkinase 1.6e-78 CL0016