Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1414 ATGCAACCAAAATTGGATCACGCATACCATTCAGTGCCAGATATCAGCTGCAATAAGCTATATACAACCTGTTCTCAAGCTCAGTGGCATGGCCTAGGGCGTGATGCCTCCTCTAGAGATATGGTAATGGAAGGCAAAGTGAGTTCATTTATGCCAACATTCGCGGATTACCATCTTGGGACCCAAACCGGCAAATCACAAGCTAAGACTGTTACTGCTGTGCTGAGAGAAGAGGAGGAGGCTACCAAAGAAAGAGATGATAAAATTGATGAAGAACATCAACAAACACAACTTCTTGTCCCTCGTGTGCCTTCAACAATAAATGAATTTTTTGCACAGCCATCACAGTTGGAGCTTGTTGGCCACTCAATGGCATGTCCTCGTTACCCATACTCAGATCCATATTATGTAGGAGTGACCCCTGCTCATGGACCGAATCCTTTGGTACGACCTCATAGTGTAGTAGTGCATACCACCCGAATGGTCTTACCACTGGAAATGGCAGAGGAGCCTGTTTACGTCAATGCCAAACAATACCATGGAATTTTGAGGCGTAGGCGATTACGTGCCAAGGCTGAGCTGGAAAAGAAGCTTATAAAGGGGAGGAAGCCCTACCTTCACGAGTCTCGACATTTGCATGCAATGAGAAGAGCAAGAGGTTGTGGTGGCCGTTTCCTGACCACAAAGAAGCTTGATAGTGATAGTGATACTAGTGCTGCAAACGCTACAACCAACAATAAGGGTACTGCTACTGCTGGTACTTCAAACTCCACTTCCAATGGAAACAAGCACTATTCACACATTCAGGGATTTAAGCTTGAGGGAGACTTCTCGGGACAACAGTCTGAAAGACTTAACCTCCCTGGGGTTGGCAGGGCCCTCACCATTAAATAA 894 0.4597 MQPKLDHAYHSVPDISCNKLYTTCSQAQWHGLGRDASSRDMVMEGKVSSFMPTFADYHLGTQTGKSQAKTVTAVLREEEEATKERDDKIDEEHQQTQLLVPRVPSTINEFFAQPSQLELVGHSMACPRYPYSDPYYVGVTPAHGPNPLVRPHSVVVHTTRMVLPLEMAEEPVYVNAKQYHGILRRRRLRAKAELEKKLIKGRKPYLHESRHLHAMRRARGCGGRFLTTKKLDSDSDTSAANATTNNKGTATAGTSNSTSNGNKHYSHIQGFKLEGDFSGQQSERLNLPGVGRALTIK 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1414 297 ProSitePatterns NF-YA/HAP2 subunit signature. 173 193 IPR018362 GO:0003677|GO:0016602
Dere02g1414 297 PRINTS CCAAT-binding transcription factor subunit B signature 171 193 IPR001289 GO:0003700|GO:0006355
Dere02g1414 297 PRINTS CCAAT-binding transcription factor subunit B signature 202 225 IPR001289 GO:0003700|GO:0006355
Dere02g1414 297 Gene3D - 168 229 - -
Dere02g1414 297 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 170 225 IPR001289 GO:0003700|GO:0006355
Dere02g1414 297 MobiDBLite consensus disorder prediction 232 266 - -
Dere02g1414 297 ProSiteProfiles NF-YA/HAP2 family profile. 168 228 IPR001289 GO:0003700|GO:0006355
Dere02g1414 297 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 62 269 IPR001289 GO:0003700|GO:0006355
Dere02g1414 297 SMART cbf3 167 228 IPR001289 GO:0003700|GO:0006355
Dere02g1414 297 MobiDBLite consensus disorder prediction 229 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1414 Dere-ChrDere02 13630296 13635084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1414 40 297 CCAAT-HAP2 Transcription Factor Family AT3G20910 37.966 8.47e-46 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Dere02g1414 CBFB_NFYA 9.8e-26 No_clan