Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1411 ATGGGCGACGACTTGTCACTTAGGTGGCAGTACATGATTGGCGGAGCTAAATCTCCTGCAAATGAAAGCATGTGCTGTGAATTGGAGCGGTTGAAGTTAGAACCGTCTCCAACAATATCTTCTAATTTGTTAAATACCACTCGACCCAGAAACGGAAAGATGAATCACTTGACTGTTGAGACTGAAGATTGTTTTGCAAGCTTGCTTGAGCTTGCAGCCAATAATGATGTTGAGCGTTTCAAAAGATCAATTGAACGTGATCCTTCCTCTGTAGATGAGGTTGGATTATGGTATGGTCGTCAAAAGGGATCAAAGCAGATGGTCAATGAGCACAGGACGCCTTTGATGGTTGCTGCTACTTATGGTAGCATTGATGTCATCAAGTTGATTCTTTCACTTTCTGATGCAGATATTAATCGATCTTGTGGCCTTGACAAAAGCACTGCCCTCCATTGTGCGGCATCAGGTGGGTCTGTTAATGCTGTAGATGTTGTGCAACTGCTTCTGGCAGCAGGTGCTGATCCTAATTCTGTGGATGCCAATGGTCACTGTCCAGTCGATGTCATTGTTGTACCTCCCAAGCTTGAATATGTCAAAAATATTCTTGAAGAACTTCTTCAAACTGATAATTCCATGGCAGGGTGTAGTCTTAGGGTGATAACAGCCACATCAAATACAAACTCTCCTCCTTTATCAACTTCTCCGGAGAATGGGTCTCCTTCTGCTCCAGAGTTGCAATTGAAGCTAAAGTTAAATGATGACCCTGTTTTTTCTGTATCAGAGAAGAAAGAATATCCTGTTGACCCATCACTTCCTGACATCAAGAACATCATATACTCAACTGATGAGTTCCGAATGTATTCTTTCAAGGTTCGACCTTGTTCACGTGCTTATTCACATGATTGGACTGAATGCCCTTTTGTCCACCCAGGGGAAAATGCTCGAAGAAGGGACCCAAGGAAGTTTCATTATAGCTGTGTCCCTTGTCCTGATTTTCGGAAAGGAGCATGCCGTCGCGGAGATATGTGCGAATATGCTCATGGTGTTTTTGAGTGCTGGCTGCATCCAGCCCAATATCGAACCCGCCTCTGCAAGGATGGGATCAATTGCTCTAGAAGAGTTTGCTTCTTTGCCCACACTACTGAGGAACTTCGGCCGTTATATGTTTCAACTGGTTCTGCTGTTCCCTCACCGCGCTCAAGCACATCTTCTGCCATGGATTTCGCTGCAGCCATGAACCTGTTGCCTGGTTCCCCTTCCTCAATGTCTGTCATGTCTCCTTCACCATTCACCCCACCTATGTCACCTTCTGCCAATGGCATGTCACACTCTTCTGTTGCTTGGCCCCAACCTAATGTCCCTACCCTGCATCTGCCAGGAAGTAATCTTCATTCCAGTCGATTGAGGTCTTCATTCAGTGCTAGAGATATTCCTGTGGAAGACTTTGATTTGTTGCCTGACTACGATGTTCAACAACACCAGCTACTTAATGAGTTGTCTTGCCTTTCCCAGCAATCTATGAATTCTAAGAATATAAACCGCTCTGGTCGTATGAAGACTCTGACCCCTTCAAATCTTGATGATCTCTTTTCTGCTGAGAGCTCTTCCCCTCGGTTTGCTGATCCAACATTGAGTTCAACTGTTTTTTCTCCCACACACAAATCAGCTGTCCTTAATCAATTTCAGCAGCAGCAAAGCTTGCTGTCACCATTGAATACAAATTTTTCATCCAAGAATGTTGAACATCCTTTGTTACAAGCCTCGTTTGGGGTTCAATCATCAGGAAGGATGTCTCCACGTAATGTGGAACCTATTTCACCAATGAGCTCTAGGCTTTCTATGCTAGCTCAACGTGAGAAGCAGCAACAGTTTCGTAGCCTTAGCTCCCGGGAACTTGGCTCCAACTCCGCTGCTGCAGCTGCTGGTTTCTCTGAAAATTCTTGGTCAAAATGGGGGTCCACCAACGGTAAATTGGATTGGGCTGTCAATGCTGATGAATTGGGTAAGCTCCGCAGATCATCTTCTTTTGAGTTTGGGAACAATGGTGAGGAGCCTGACTTATCATGGGTGCAGTCACTCGTGAAAGAATCTCCAACTGAGATTAAAGAGAAATTGGGAACAGCTGTCTCAAGTGTTGCAGCGGCTGGATACTCTGGTGAGGGATCGAATTTGAGCCCTCAAATTTGA 2187 0.4499 MGDDLSLRWQYMIGGAKSPANESMCCELERLKLEPSPTISSNLLNTTRPRNGKMNHLTVETEDCFASLLELAANNDVERFKRSIERDPSSVDEVGLWYGRQKGSKQMVNEHRTPLMVAATYGSIDVIKLILSLSDADINRSCGLDKSTALHCAASGGSVNAVDVVQLLLAAGADPNSVDANGHCPVDVIVVPPKLEYVKNILEELLQTDNSMAGCSLRVITATSNTNSPPLSTSPENGSPSAPELQLKLKLNDDPVFSVSEKKEYPVDPSLPDIKNIIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGINCSRRVCFFAHTTEELRPLYVSTGSAVPSPRSSTSSAMDFAAAMNLLPGSPSSMSVMSPSPFTPPMSPSANGMSHSSVAWPQPNVPTLHLPGSNLHSSRLRSSFSARDIPVEDFDLLPDYDVQQHQLLNELSCLSQQSMNSKNINRSGRMKTLTPSNLDDLFSAESSSPRFADPTLSSTVFSPTHKSAVLNQFQQQQSLLSPLNTNFSSKNVEHPLLQASFGVQSSGRMSPRNVEPISPMSSRLSMLAQREKQQQFRSLSSRELGSNSAAAAAGFSENSWSKWGSTNGKLDWAVNADELGKLRRSSSFEFGNNGEEPDLSWVQSLVKESPTEIKEKLGTAVSSVAAAGYSGEGSNLSPQI 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1411 728 PANTHER UNKEMPT FAMILY MEMBER 70 697 IPR045234 -
Dere02g1411 728 ProSiteProfiles Ankyrin repeat profile. 145 180 IPR002110 GO:0005515
Dere02g1411 728 Pfam Ankyrin repeats (3 copies) 105 179 IPR002110 GO:0005515
Dere02g1411 728 PRINTS Ankyrin repeat signature 164 178 IPR002110 GO:0005515
Dere02g1411 728 PRINTS Ankyrin repeat signature 111 126 IPR002110 GO:0005515
Dere02g1411 728 ProSiteProfiles Zinc finger C3H1-type profile. 328 350 IPR000571 GO:0046872
Dere02g1411 728 FunFam Zinc finger CCCH domain-containing protein 66 281 349 - -
Dere02g1411 728 SMART ANK_2a 145 177 IPR002110 GO:0005515
Dere02g1411 728 SMART ANK_2a 110 140 IPR002110 GO:0005515
Dere02g1411 728 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 328 348 IPR000571 GO:0046872
Dere02g1411 728 SMART c3hfinal6 358 381 IPR000571 GO:0046872
Dere02g1411 728 SMART c3hfinal6 323 349 IPR000571 GO:0046872
Dere02g1411 728 Gene3D - 324 386 - -
Dere02g1411 728 Gene3D - 38 279 IPR036770 -
Dere02g1411 728 SUPERFAMILY Ankyrin repeat 68 203 IPR036770 -
Dere02g1411 728 ProSiteProfiles Ankyrin repeat region circular profile. 145 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1411 Dere-ChrDere02 13602312 13606391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1411 24 697 C2H2 Transcription Factor Family AT5G12850 54.269 0.0 685
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dere02g1411 Ank_2 1e-09 CL0465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere02g1411 02 13602312 13606391 Dere02g1411 02 13602312 13606391 ECH