Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1407 ATGTGCTGGCTCGTTCTCGTTCTCCTTCCAATATCTCACACCAGCAGAACTGGAGCAGCAGCAGCAGTGGCAATGAAGAGAGGAAACGCTAAGAAGAAGGCATCAGCTCTCTCTTTGGAGCAATTTATCTCAACCATGGCCCCTCTTATTGATTTGGAAAAGGAAGCTGAGATATCAAGCTCAATCACCTCCGGCGCGTTGAGAAATTTGGATACTGCTCAAAAAAGGGGCTCGACAATCCTCAATTTGAAGTGTTTTGATGTTCAGACAGGGCTTATGGGGAAATCTCTTATTGAGTTCCAGTCCACGAAAGGAGATGTTCTTCCTGCACACAAGTTTAGTACACATGATGTTGTTGTTTTAAAACTCAGCAAGGCTGATTTGGGGTCCCCCGCCCTTGGACAAGGTGTAGTTTACCGGTTAAAGGATTCCTCAATAACGGTTGCTTTTGATGACATACCAGAAGATGGTTTAAATAGTCCCCTAAGGCTGGAGAAAGTGGCAAACGAGGTGACATACCGTAGGATGAAGGATGCATTAATACAGTTGAGTAAAGGAGTGCATAAGGGTCCTGCTGCTGATCTAATTCCTGTCTTGTTTGGAGAGAGGCCGCCAACAGTGTCCAAGAAGGATGTCTCATTCACTCCATTTAACCCCAACCTTGATCACTCTCAGAAAGATGCAATCTCAAAGGCCCTATCATCAAAGCATGTATTTTTGCTCCATGGGCCCCCTGGAACGGGAAAAACTACTACAGTGGTAGAAATTATATTACAAGAAGTTAAGCGTGGATCAAAAATTCTCGTTTGTGCTGCCTCAAATATTGCTGTTGACAACATTGTTGAGCGACTTGTTACTCGCAGAGTTAAGTTAGTGAGATTGGGTCATCCTGCACGTTTATTGCCTCAAGTACTGGACAGTGCACTGGATGCTCAGGTACTTCGAGGAGACAATAGTTCACTTGCAAATGACATTCGGAAGGAAATGAAGGCATTAAATGGAAAGCTGCTGAAAACCAAAGATAGAAATACAAGGAGGGACATTCAGAAGGAACTTAGGACTCTGTCCAAAGAAGAACGAAAAAGGCAGCAGCTTGCTGTAACAGACGTAATTAAAAGTGCAGATGTGGTATTAACCACTTTGATAGGGGCTTCTTCTAAGAAGCTGGATAACACTTCATTTGACTTGGTGATTATTGATGAAGCAGCCCAAGCACTTGAGATAGCATGCTGGATACCTTTGCTGAAGGGTTCGAGATGTATACTTGCAGGGGATCATCTTCAACTCCCACCAACTATTCAAAGTGTTGAGGCTGAGAAGAAAGGATTGGGAAGAACACTCTTTGAACGTCTTGCGGATATGTATGGAGATGAAGTCACATCTATGCTAACTGTCCAGTACCGCATGCATGAACTTATCATGGAGTGGTCTTCTAAAGAGCTTTACAACAGCAAGGTCAAAGCCCATGCAAGTGTTGCTGCACATATGTTGTATGATCTTGAAGATGTGAAGAGGACCTCTTCAACTGAACCAACCCTTCTTCTCATAGACATAGCTGGATGTGACATGGAAGAAAAGAAAGATGAAGAAGATAGCAGCCTGAATGAAGGTGAAGCGGATGTTGCTATGGCCCATGCAAAGCGACTAGTGCAGAGTGGTGTGCTGCCTTCTGATATTGGAATTATTACTCCATATGCTGCACAGGTTGTTTTGCTTAAGATGTTGAAAAACAAGGAGAACTCACTGAAGGATGTTGAAATCTCTACAGTTGATGGCTTCCAGGGACGGGAGAAGGAAGCCATTATTATTTCAATGGTTCGGTCAAATTCAAAAAAAGAGGTGGGCTTTCTGAGTGATCGCCGCCGAATGAATGTGGCTGTGACACGGGCACGGAGGCAATGCTGCCTTGTCTGCGACACTGAGACTGTCAGTAGTGATGGATTCTTAAAGCGCCTGATTGAGTATTTTGAAGAGCATGGAGAGTATCAGTGTGCATCTGAGTATCAGAATGAATAG 2016 0.4395 MCWLVLVLLPISHTSRTGAAAAVAMKRGNAKKKASALSLEQFISTMAPLIDLEKEAEISSSITSGALRNLDTAQKRGSTILNLKCFDVQTGLMGKSLIEFQSTKGDVLPAHKFSTHDVVVLKLSKADLGSPALGQGVVYRLKDSSITVAFDDIPEDGLNSPLRLEKVANEVTYRRMKDALIQLSKGVHKGPAADLIPVLFGERPPTVSKKDVSFTPFNPNLDHSQKDAISKALSSKHVFLLHGPPGTGKTTTVVEIILQEVKRGSKILVCAASNIAVDNIVERLVTRRVKLVRLGHPARLLPQVLDSALDAQVLRGDNSSLANDIRKEMKALNGKLLKTKDRNTRRDIQKELRTLSKEERKRQQLAVTDVIKSADVVLTTLIGASSKKLDNTSFDLVIIDEAAQALEIACWIPLLKGSRCILAGDHLQLPPTIQSVEAEKKGLGRTLFERLADMYGDEVTSMLTVQYRMHELIMEWSSKELYNSKVKAHASVAAHMLYDLEDVKRTSSTEPTLLLIDIAGCDMEEKKDEEDSSLNEGEADVAMAHAKRLVQSGVLPSDIGIITPYAAQVVLLKMLKNKENSLKDVEISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARRQCCLVCDTETVSSDGFLKRLIEYFEEHGEYQCASEYQNE 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1407 671 Coils Coil 322 342 - -
Dere02g1407 671 CDD SF1_C_Upf1 469 657 IPR047187 -
Dere02g1407 671 CDD DEXXQc_SMUBP2 220 468 - -
Dere02g1407 671 FunFam P-loop containing nucleoside triphosphate hydrolase 467 671 - -
Dere02g1407 671 Gene3D - 467 671 IPR027417 -
Dere02g1407 671 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 28 670 - -
Dere02g1407 671 SMART AAA_5 235 453 IPR003593 GO:0016887
Dere02g1407 671 Pfam AAA domain 221 435 IPR041677 GO:0004386
Dere02g1407 671 Gene3D - 46 451 IPR027417 -
Dere02g1407 671 NCBIfam IGHMBP2 family helicase 369 665 IPR004483 GO:0003677|GO:0005524
Dere02g1407 671 Gene3D - 65 167 - -
Dere02g1407 671 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 216 655 IPR027417 -
Dere02g1407 671 SMART ultradead3 217 468 IPR014001 -
Dere02g1407 671 FunFam DNA-binding protein SMUBP-2 65 167 - -
Dere02g1407 671 Pfam AAA domain 444 640 IPR041679 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1407 Dere-ChrDere02 13578818 13585989 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1407 194 404 Core DNA Replication Machinery Family AT1G08840 27.962 3.52e-12 68.2