Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1402 ATGGCTGACCCTTTCTCCAATTTCTTCTCTTCATCATCCGGATTTTTTCACTTCAATCCCATCCCCCGTTATTATCCTCCTCCTCCTCCTGCCCCTTCTCCCCACCACCATCCCTATCTCCACAACTTCATCGCTTCTTCTTCACCTCCTACTTCCCCTCCTCTTCGAGAAGCCCTTCCCCTTCTCAACCCCTCCAAGCATCAACAACAGCATCATCAAGATCACCAGCAACATGCTTGCAGTAGTCCTATGGAAGTGGAGGACACTGCTACTAAGCCCAAAGAAGAAGACGACGAAGAAGAAGAGGATGAGGATGAGAATAGTGTGACTGTTGCACTCCATATAGGGCTGCCTAGCCCTAGTGCTGCCGAGATGGCCTCTCTCCTCTCGTCTTCCTCCACTCAAACACAACAAGCAGTAGATGGTGAGACTCTTGAGGATAATTCTTCTTCTGGCCTCCCCAGGCTCAACAAGGGCCAGTACTGGATCCCTACCCCTTCTCAGATTCTCATTGGTCCTACCCAGTTCTCTTGCCCTGTTTGCTCCAAAACCTTCAACCGCTACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAATACAGAAAAGGGCCAGAATCTCTGAGGGGTACTCAACCAACGGGAATGCTGAGGCTTCCTTGCTATTGCTGTGCCCCAGGGTGCAGGAACAACATTGACCACCCAAGGGCAAAGCCCCTCAAGGATTTTAGAACCCTTCAAACACACTACAAGAGGAAGCATGGGATTAAGCCCTTCATGTGCAGAAAATGTGGCAAGGCTTTCGCTGTGAGAGGGGATTGGAGAACCCATGAGAAGAACTGTGGGAAGCTTTGGTACTGTATTTGTGGCTCTGATTTCAAGCACAAGAGGTCCCTTAAAGATCATATCAAGGCTTTTGGGAGTGGCCATGCTGCTTACGGGATTGATGGCTTTGAAGAAGAAGATGAGCCAGCATCTGAAGTAGAGCAAGATAATGATTCCACCTACTAA 1014 0.4921 MADPFSNFFSSSSGFFHFNPIPRYYPPPPPAPSPHHHPYLHNFIASSSPPTSPPLREALPLLNPSKHQQQHHQDHQQHACSSPMEVEDTATKPKEEDDEEEEDEDENSVTVALHIGLPSPSAAEMASLLSSSSTQTQQAVDGETLEDNSSSGLPRLNKGQYWIPTPSQILIGPTQFSCPVCSKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGIDGFEEEDEPASEVEQDNDSTY 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1402 337 ProSiteProfiles Zinc finger C2H2 type domain profile. 176 203 IPR013087 -
Dere02g1402 337 ProSitePatterns Zinc finger C2H2 type domain signature. 178 198 IPR013087 -
Dere02g1402 337 SUPERFAMILY beta-beta-alpha zinc fingers 242 280 IPR036236 -
Dere02g1402 337 MobiDBLite consensus disorder prediction 123 157 - -
Dere02g1402 337 PANTHER ZINC FINGER PROTEIN WIP2 30 333 IPR043584 GO:0003700|GO:0010468
Dere02g1402 337 MobiDBLite consensus disorder prediction 124 157 - -
Dere02g1402 337 FunFam Zinc finger protein WIP2 229 311 - -
Dere02g1402 337 SUPERFAMILY beta-beta-alpha zinc fingers 172 198 IPR036236 -
Dere02g1402 337 MobiDBLite consensus disorder prediction 92 107 - -
Dere02g1402 337 ProSiteProfiles Zinc finger C2H2 type domain profile. 260 280 IPR013087 -
Dere02g1402 337 Gene3D Classic Zinc Finger 238 312 - -
Dere02g1402 337 Gene3D Classic Zinc Finger 175 198 - -
Dere02g1402 337 SMART c2h2final6 176 198 IPR013087 -
Dere02g1402 337 SMART c2h2final6 260 280 IPR013087 -
Dere02g1402 337 FunFam zinc finger protein WIP2-like 175 198 - -
Dere02g1402 337 MobiDBLite consensus disorder prediction 36 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1402 Dere-ChrDere02 13527272 13529523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1402 1 334 C2H2 Transcription Factor Family AT3G57670 65.000 6.01e-143 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere02g1402 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2465 01 39244368 39246551 Dere02g1402 02 13527272 13529523 CCT
Dere02g1402 02 13527272 13529523 Dere02g1402 02 13527272 13529523 ECH